miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 23896 0.76 0.11068
Target:  5'- cGCCCGaGCCGCCGCGCCCG--CC-GUCg -3'
miRNA:   3'- -UGGGC-CGGUGGUGUGGGCuaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 33113 0.77 0.095313
Target:  5'- uGCCUGuagggccacgcggcaGCCGCCGCGCgUGAUCUUGCCg -3'
miRNA:   3'- -UGGGC---------------CGGUGGUGUGgGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 17922 0.78 0.073967
Target:  5'- uGCCCGGUCuggACCGCGCCCGGugUCCacGCCu -3'
miRNA:   3'- -UGGGCCGG---UGGUGUGGGCU--AGGa-CGG- -5'
23249 5' -61.5 NC_005259.1 + 48149 0.79 0.059485
Target:  5'- cCCCGGCCACCACcucGCCCGAaaccgCCcccGCCg -3'
miRNA:   3'- uGGGCCGGUGGUG---UGGGCUa----GGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 20161 0.81 0.045207
Target:  5'- uGCCCuGGCCACCGCGCCCGccgCCUcgGCUg -3'
miRNA:   3'- -UGGG-CCGGUGGUGUGGGCua-GGA--CGG- -5'
23249 5' -61.5 NC_005259.1 + 9968 0.73 0.172572
Target:  5'- cGCCCGaCCACCGCACCgguCGAgguggCCaGCCg -3'
miRNA:   3'- -UGGGCcGGUGGUGUGG---GCUa----GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 31294 0.73 0.181615
Target:  5'- uGCCCGGUCugCGCAa-CGAgCUUGCCg -3'
miRNA:   3'- -UGGGCCGGugGUGUggGCUaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 61856 0.7 0.26356
Target:  5'- cACCuCGGCCACCGC-CUCG--CgUGCCg -3'
miRNA:   3'- -UGG-GCCGGUGGUGuGGGCuaGgACGG- -5'
23249 5' -61.5 NC_005259.1 + 7190 0.7 0.251103
Target:  5'- uGCCCGGCCugCggACGCaCCGGg-CUGCg -3'
miRNA:   3'- -UGGGCCGGugG--UGUG-GGCUagGACGg -5'
23249 5' -61.5 NC_005259.1 + 26538 0.7 0.251103
Target:  5'- aGCuuGGCCACCACGaucucaCCGAggCUGUa -3'
miRNA:   3'- -UGggCCGGUGGUGUg-----GGCUagGACGg -5'
23249 5' -61.5 NC_005259.1 + 34225 0.71 0.233332
Target:  5'- cCCCGGC----GCugCCGGUCUUGCCg -3'
miRNA:   3'- uGGGCCGguggUGugGGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 52934 0.71 0.233332
Target:  5'- gGCCUGGUCGCUcaACGCCCGuaagcaCCcGCCg -3'
miRNA:   3'- -UGGGCCGGUGG--UGUGGGCua----GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 25914 0.71 0.227648
Target:  5'- cGCCUGaGCCGCCGC-CgCCGGUCCggugagcgcacGCCg -3'
miRNA:   3'- -UGGGC-CGGUGGUGuG-GGCUAGGa----------CGG- -5'
23249 5' -61.5 NC_005259.1 + 8021 0.71 0.222081
Target:  5'- cCCCGGCgGCCAC-CCCGuuucgcgaacuGUCCgacaccGCCg -3'
miRNA:   3'- uGGGCCGgUGGUGuGGGC-----------UAGGa-----CGG- -5'
23249 5' -61.5 NC_005259.1 + 8164 0.72 0.211296
Target:  5'- gGCCaUGGCCugagGCUACcCCCGuggCCUGCCg -3'
miRNA:   3'- -UGG-GCCGG----UGGUGuGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 44512 0.72 0.206074
Target:  5'- uGCCCuGGCCACCcacgccgcCGCCCGGcagUCCacucaUGCCg -3'
miRNA:   3'- -UGGG-CCGGUGGu-------GUGGGCU---AGG-----ACGG- -5'
23249 5' -61.5 NC_005259.1 + 22843 0.72 0.195965
Target:  5'- gGCCCGGCCcacCCGCAgCCGcaaCCUGUa -3'
miRNA:   3'- -UGGGCCGGu--GGUGUgGGCua-GGACGg -5'
23249 5' -61.5 NC_005259.1 + 4697 0.72 0.190591
Target:  5'- aGCUCGGCCccguggugcgaugACCGCGCCCGAgaaagCCcGCa -3'
miRNA:   3'- -UGGGCCGG-------------UGGUGUGGGCUa----GGaCGg -5'
23249 5' -61.5 NC_005259.1 + 39010 0.72 0.185819
Target:  5'- aGCgCGGUgACCAgACCCGAgauccguUCCUGCg -3'
miRNA:   3'- -UGgGCCGgUGGUgUGGGCU-------AGGACGg -5'
23249 5' -61.5 NC_005259.1 + 60432 0.73 0.181615
Target:  5'- gGCCCacggGGCgGCCACGCCCGAcaccucgauUCCgacGCUg -3'
miRNA:   3'- -UGGG----CCGgUGGUGUGGGCU---------AGGa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.