Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23249 | 5' | -61.5 | NC_005259.1 | + | 36665 | 0.66 | 0.452209 |
Target: 5'- cGCCCucGCCGCCGcCGCCgGgGUCUUGaCCg -3' miRNA: 3'- -UGGGc-CGGUGGU-GUGGgC-UAGGAC-GG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 1141 | 0.66 | 0.452209 |
Target: 5'- cGCCCcaacaggaaGGaCCACCACcaugUUCGAUCCcGCCg -3' miRNA: 3'- -UGGG---------CC-GGUGGUGu---GGGCUAGGaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 25954 | 0.66 | 0.452209 |
Target: 5'- uGCCCGGcCCGCCgACGCCugCGAUgagaCCgggcagcGCCg -3' miRNA: 3'- -UGGGCC-GGUGG-UGUGG--GCUA----GGa------CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 37829 | 0.66 | 0.442966 |
Target: 5'- gACCuCGG--GCCACACCUGcGUCgaGCCg -3' miRNA: 3'- -UGG-GCCggUGGUGUGGGC-UAGgaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 18442 | 0.66 | 0.442966 |
Target: 5'- cGCCuCGuGCaaCACCGCGCacaccgCCGGUCCUgaGCCg -3' miRNA: 3'- -UGG-GC-CG--GUGGUGUG------GGCUAGGA--CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 17482 | 0.66 | 0.433831 |
Target: 5'- cGCCCGGCCAUgcgggCAaggacggcgaccUugCCGAUCCgaGCUc -3' miRNA: 3'- -UGGGCCGGUG-----GU------------GugGGCUAGGa-CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 57677 | 0.66 | 0.433831 |
Target: 5'- gUCCGGCCaaucgaccgugGCCAggUugCCGggCUUGCCc -3' miRNA: 3'- uGGGCCGG-----------UGGU--GugGGCuaGGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 6115 | 0.66 | 0.433831 |
Target: 5'- gGCCgaGGCCGCCGCuACgCGggCaCUGCa -3' miRNA: 3'- -UGGg-CCGGUGGUG-UGgGCuaG-GACGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 53148 | 0.66 | 0.433831 |
Target: 5'- gACCaucaGCCGCUACGCcgaggCCGAUCUcGCCa -3' miRNA: 3'- -UGGgc--CGGUGGUGUG-----GGCUAGGaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 31551 | 0.66 | 0.432923 |
Target: 5'- cGCCUuguagGGUgccgcugCACCGCGCCUGAUCgUcGCCa -3' miRNA: 3'- -UGGG-----CCG-------GUGGUGUGGGCUAGgA-CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 36626 | 0.67 | 0.424805 |
Target: 5'- cGCCCGcGCCGcCCGCAaggcCCgCGAUCagcgaGCCg -3' miRNA: 3'- -UGGGC-CGGU-GGUGU----GG-GCUAGga---CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 18291 | 0.67 | 0.424805 |
Target: 5'- cGCCCGacgaGCCGCCGuucUGCCCGGUgugcgacaCCgagGCCg -3' miRNA: 3'- -UGGGC----CGGUGGU---GUGGGCUA--------GGa--CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 36044 | 0.67 | 0.424805 |
Target: 5'- aGCgaGGCCACC-CGCgCGAgcaccaCCUGCUg -3' miRNA: 3'- -UGggCCGGUGGuGUGgGCUa-----GGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 7275 | 0.67 | 0.424805 |
Target: 5'- uGCUCGGCUACCGC-CCCGccCCcaaGCa -3' miRNA: 3'- -UGGGCCGGUGGUGuGGGCuaGGa--CGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 63182 | 0.67 | 0.424805 |
Target: 5'- cGCCgaGGUgAUCGCACCCcGGUCgUGCg -3' miRNA: 3'- -UGGg-CCGgUGGUGUGGG-CUAGgACGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 25180 | 0.67 | 0.415893 |
Target: 5'- gACCCGuaCGCCGC-CgCCGAUCCcaCCg -3' miRNA: 3'- -UGGGCcgGUGGUGuG-GGCUAGGacGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 59689 | 0.67 | 0.415893 |
Target: 5'- -gCCGGaCCugCACACaCCGAgUCgUGUCc -3' miRNA: 3'- ugGGCC-GGugGUGUG-GGCU-AGgACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 8406 | 0.67 | 0.415893 |
Target: 5'- aGCCgGGCCACCucgcuggcgaGCAUgCGAUgCUcguUGCCg -3' miRNA: 3'- -UGGgCCGGUGG----------UGUGgGCUA-GG---ACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 64748 | 0.67 | 0.415893 |
Target: 5'- cACCCGcCCACCGCGCCucgcgaCGGUgC-GCCu -3' miRNA: 3'- -UGGGCcGGUGGUGUGG------GCUAgGaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 42480 | 0.67 | 0.398417 |
Target: 5'- gGCCCGGCCcguagaGCCGUgACCCG-UCCggcggugugGCCa -3' miRNA: 3'- -UGGGCCGG------UGGUG-UGGGCuAGGa--------CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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