Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23250 | 5' | -57.5 | NC_005259.1 | + | 771 | 0.7 | 0.439292 |
Target: 5'- uCCACCGCgccgaggcggCugCCCUCGGuuGgGUGGc -3' miRNA: 3'- -GGUGGCGa---------GugGGGAGCUggUgCAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 68736 | 0.7 | 0.430057 |
Target: 5'- gUCGCCGCUUGCCgagCUCGACCcCGgcGa -3' miRNA: 3'- -GGUGGCGAGUGGg--GAGCUGGuGCauC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 61855 | 0.68 | 0.59945 |
Target: 5'- gCACCucgGC-CACCgCCUCGcguGCCGCGUGa -3' miRNA: 3'- gGUGG---CGaGUGG-GGAGC---UGGUGCAUc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 12509 | 0.68 | 0.588967 |
Target: 5'- -aGCCGCUgGgCCgCUCGGCUAccCGUAGa -3' miRNA: 3'- ggUGGCGAgUgGG-GAGCUGGU--GCAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 11679 | 0.68 | 0.57539 |
Target: 5'- gCCACCGCcucacuccaaaUCGCugaucucaagcauuCCCUgGGCCACGgcGa -3' miRNA: 3'- -GGUGGCG-----------AGUG--------------GGGAgCUGGUGCauC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 17588 | 0.68 | 0.568108 |
Target: 5'- gCUGCCGCgcaACCUCggcgCGAUgACGUGGg -3' miRNA: 3'- -GGUGGCGag-UGGGGa---GCUGgUGCAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 25087 | 0.68 | 0.558781 |
Target: 5'- aCCGCCGCUgcgccCGCCCCgagcaagggcaaggUCGACCccgccgaccuccccgACGUGa -3' miRNA: 3'- -GGUGGCGA-----GUGGGG--------------AGCUGG---------------UGCAUc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 46941 | 0.68 | 0.54744 |
Target: 5'- cCCGCCGC--GCCgC-CGACCGCGUu- -3' miRNA: 3'- -GGUGGCGagUGGgGaGCUGGUGCAuc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 6497 | 0.67 | 0.652085 |
Target: 5'- gUACUGCUgGCCCacaUCGACCGacgcCGUGc -3' miRNA: 3'- gGUGGCGAgUGGGg--AGCUGGU----GCAUc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 62823 | 0.67 | 0.641557 |
Target: 5'- gCGCCGCUUGCCCgCgaggUCGAgCGCGcGGu -3' miRNA: 3'- gGUGGCGAGUGGG-G----AGCUgGUGCaUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 18301 | 0.67 | 0.641557 |
Target: 5'- gCCGCCGUUCugCCCg-GugUGCGa-- -3' miRNA: 3'- -GGUGGCGAGugGGGagCugGUGCauc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 30551 | 0.67 | 0.63102 |
Target: 5'- gCCACCgagcgguuGUUgACgCCCUUGGCCGCaGUAGc -3' miRNA: 3'- -GGUGG--------CGAgUG-GGGAGCUGGUG-CAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 11840 | 0.67 | 0.628913 |
Target: 5'- aCCGCCGCacuccgaccugcCACCCgUCGGCgaACGUGa -3' miRNA: 3'- -GGUGGCGa-----------GUGGGgAGCUGg-UGCAUc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 42218 | 0.67 | 0.620485 |
Target: 5'- cCCGCCGCgcCGCCguccccggccaUCUCGACCACc--- -3' miRNA: 3'- -GGUGGCGa-GUGG-----------GGAGCUGGUGcauc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 37655 | 0.67 | 0.609959 |
Target: 5'- aCCGCCGC-CGCCgCCggugCcGCCACGg-- -3' miRNA: 3'- -GGUGGCGaGUGG-GGa---GcUGGUGCauc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 39903 | 0.67 | 0.609959 |
Target: 5'- gCCGCCGCcCGCCUCgauccgUCGaggGCCGCGUcgAGg -3' miRNA: 3'- -GGUGGCGaGUGGGG------AGC---UGGUGCA--UC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 39328 | 0.67 | 0.609959 |
Target: 5'- gCGCCGCUggugACCgucaaCUCGACCACGa-- -3' miRNA: 3'- gGUGGCGAg---UGGg----GAGCUGGUGCauc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 17462 | 0.67 | 0.609959 |
Target: 5'- gCCACCGCcCACCguggugacgCC-CGGCCAUGcGGg -3' miRNA: 3'- -GGUGGCGaGUGG---------GGaGCUGGUGCaUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 10063 | 0.67 | 0.609959 |
Target: 5'- aCGCCGgUUugCCCUCGcaggacGCCGacgaGUAGa -3' miRNA: 3'- gGUGGCgAGugGGGAGC------UGGUg---CAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 17878 | 0.66 | 0.714575 |
Target: 5'- -aGCCGCUCgguuggACCCC-CGcACCGCGc-- -3' miRNA: 3'- ggUGGCGAG------UGGGGaGC-UGGUGCauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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