miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23250 5' -57.5 NC_005259.1 + 46693 0.78 0.147365
Target:  5'- gCCGCCGCcgCGUCCCUCGACgCGCGUGc -3'
miRNA:   3'- -GGUGGCGa-GUGGGGAGCUG-GUGCAUc -5'
23250 5' -57.5 NC_005259.1 + 68736 0.7 0.430057
Target:  5'- gUCGCCGCUUGCCgagCUCGACCcCGgcGa -3'
miRNA:   3'- -GGUGGCGAGUGGg--GAGCUGGuGCauC- -5'
23250 5' -57.5 NC_005259.1 + 771 0.7 0.439292
Target:  5'- uCCACCGCgccgaggcggCugCCCUCGGuuGgGUGGc -3'
miRNA:   3'- -GGUGGCGa---------GugGGGAGCUggUgCAUC- -5'
23250 5' -57.5 NC_005259.1 + 12509 0.68 0.588967
Target:  5'- -aGCCGCUgGgCCgCUCGGCUAccCGUAGa -3'
miRNA:   3'- ggUGGCGAgUgGG-GAGCUGGU--GCAUC- -5'
23250 5' -57.5 NC_005259.1 + 11679 0.68 0.57539
Target:  5'- gCCACCGCcucacuccaaaUCGCugaucucaagcauuCCCUgGGCCACGgcGa -3'
miRNA:   3'- -GGUGGCG-----------AGUG--------------GGGAgCUGGUGCauC- -5'
23250 5' -57.5 NC_005259.1 + 17588 0.68 0.568108
Target:  5'- gCUGCCGCgcaACCUCggcgCGAUgACGUGGg -3'
miRNA:   3'- -GGUGGCGag-UGGGGa---GCUGgUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 25087 0.68 0.558781
Target:  5'- aCCGCCGCUgcgccCGCCCCgagcaagggcaaggUCGACCccgccgaccuccccgACGUGa -3'
miRNA:   3'- -GGUGGCGA-----GUGGGG--------------AGCUGG---------------UGCAUc -5'
23250 5' -57.5 NC_005259.1 + 46941 0.68 0.54744
Target:  5'- cCCGCCGC--GCCgC-CGACCGCGUu- -3'
miRNA:   3'- -GGUGGCGagUGGgGaGCUGGUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 48139 0.7 0.467658
Target:  5'- aCCACCGC-CGCCCC--GGCCACc--- -3'
miRNA:   3'- -GGUGGCGaGUGGGGagCUGGUGcauc -5'
23250 5' -57.5 NC_005259.1 + 35873 0.7 0.458096
Target:  5'- uCCACCGCagcCGCCgCCgaggcaGACCACGgcGa -3'
miRNA:   3'- -GGUGGCGa--GUGG-GGag----CUGGUGCauC- -5'
23250 5' -57.5 NC_005259.1 + 5538 0.7 0.458096
Target:  5'- -gGCUGCUCucGCCCga-GGCCGCGUGGg -3'
miRNA:   3'- ggUGGCGAG--UGGGgagCUGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 31764 0.7 0.44864
Target:  5'- cCCACCGCcccgUCAUCgaugugcugcgCCUUGACCGCGUc- -3'
miRNA:   3'- -GGUGGCG----AGUGG-----------GGAGCUGGUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 45652 0.7 0.439292
Target:  5'- gCCGCCGUgaaCACCgC-CGuCCGCGUAGu -3'
miRNA:   3'- -GGUGGCGa--GUGGgGaGCuGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 43842 0.7 0.439292
Target:  5'- gCCGCCGCUCGCCaugCCgagCGcACC-CGUGa -3'
miRNA:   3'- -GGUGGCGAGUGG---GGa--GC-UGGuGCAUc -5'
23250 5' -57.5 NC_005259.1 + 14190 0.7 0.439292
Target:  5'- -aACCGCUCACCCC-CGAgCAgGccgGGa -3'
miRNA:   3'- ggUGGCGAGUGGGGaGCUgGUgCa--UC- -5'
23250 5' -57.5 NC_005259.1 + 37928 1.11 0.000752
Target:  5'- cCCACCGCUCACCCCUCGACCACGUAGa -3'
miRNA:   3'- -GGUGGCGAGUGGGGAGCUGGUGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.