miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23250 5' -57.5 NC_005259.1 + 30551 0.67 0.63102
Target:  5'- gCCACCgagcgguuGUUgACgCCCUUGGCCGCaGUAGc -3'
miRNA:   3'- -GGUGG--------CGAgUG-GGGAGCUGGUG-CAUC- -5'
23250 5' -57.5 NC_005259.1 + 11840 0.67 0.628913
Target:  5'- aCCGCCGCacuccgaccugcCACCCgUCGGCgaACGUGa -3'
miRNA:   3'- -GGUGGCGa-----------GUGGGgAGCUGg-UGCAUc -5'
23250 5' -57.5 NC_005259.1 + 42218 0.67 0.620485
Target:  5'- cCCGCCGCgcCGCCguccccggccaUCUCGACCACc--- -3'
miRNA:   3'- -GGUGGCGa-GUGG-----------GGAGCUGGUGcauc -5'
23250 5' -57.5 NC_005259.1 + 39328 0.67 0.609959
Target:  5'- gCGCCGCUggugACCgucaaCUCGACCACGa-- -3'
miRNA:   3'- gGUGGCGAg---UGGg----GAGCUGGUGCauc -5'
23250 5' -57.5 NC_005259.1 + 37655 0.67 0.609959
Target:  5'- aCCGCCGC-CGCCgCCggugCcGCCACGg-- -3'
miRNA:   3'- -GGUGGCGaGUGG-GGa---GcUGGUGCauc -5'
23250 5' -57.5 NC_005259.1 + 39903 0.67 0.609959
Target:  5'- gCCGCCGCcCGCCUCgauccgUCGaggGCCGCGUcgAGg -3'
miRNA:   3'- -GGUGGCGaGUGGGG------AGC---UGGUGCA--UC- -5'
23250 5' -57.5 NC_005259.1 + 17462 0.67 0.609959
Target:  5'- gCCACCGCcCACCguggugacgCC-CGGCCAUGcGGg -3'
miRNA:   3'- -GGUGGCGaGUGG---------GGaGCUGGUGCaUC- -5'
23250 5' -57.5 NC_005259.1 + 10063 0.67 0.609959
Target:  5'- aCGCCGgUUugCCCUCGcaggacGCCGacgaGUAGa -3'
miRNA:   3'- gGUGGCgAGugGGGAGC------UGGUg---CAUC- -5'
23250 5' -57.5 NC_005259.1 + 61855 0.68 0.59945
Target:  5'- gCACCucgGC-CACCgCCUCGcguGCCGCGUGa -3'
miRNA:   3'- gGUGG---CGaGUGG-GGAGC---UGGUGCAUc -5'
23250 5' -57.5 NC_005259.1 + 12509 0.68 0.588967
Target:  5'- -aGCCGCUgGgCCgCUCGGCUAccCGUAGa -3'
miRNA:   3'- ggUGGCGAgUgGG-GAGCUGGU--GCAUC- -5'
23250 5' -57.5 NC_005259.1 + 11679 0.68 0.57539
Target:  5'- gCCACCGCcucacuccaaaUCGCugaucucaagcauuCCCUgGGCCACGgcGa -3'
miRNA:   3'- -GGUGGCG-----------AGUG--------------GGGAgCUGGUGCauC- -5'
23250 5' -57.5 NC_005259.1 + 17588 0.68 0.568108
Target:  5'- gCUGCCGCgcaACCUCggcgCGAUgACGUGGg -3'
miRNA:   3'- -GGUGGCGag-UGGGGa---GCUGgUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 25087 0.68 0.558781
Target:  5'- aCCGCCGCUgcgccCGCCCCgagcaagggcaaggUCGACCccgccgaccuccccgACGUGa -3'
miRNA:   3'- -GGUGGCGA-----GUGGGG--------------AGCUGG---------------UGCAUc -5'
23250 5' -57.5 NC_005259.1 + 46941 0.68 0.54744
Target:  5'- cCCGCCGC--GCCgC-CGACCGCGUu- -3'
miRNA:   3'- -GGUGGCGagUGGgGaGCUGGUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 48139 0.7 0.467658
Target:  5'- aCCACCGC-CGCCCC--GGCCACc--- -3'
miRNA:   3'- -GGUGGCGaGUGGGGagCUGGUGcauc -5'
23250 5' -57.5 NC_005259.1 + 35873 0.7 0.458096
Target:  5'- uCCACCGCagcCGCCgCCgaggcaGACCACGgcGa -3'
miRNA:   3'- -GGUGGCGa--GUGG-GGag----CUGGUGCauC- -5'
23250 5' -57.5 NC_005259.1 + 5538 0.7 0.458096
Target:  5'- -gGCUGCUCucGCCCga-GGCCGCGUGGg -3'
miRNA:   3'- ggUGGCGAG--UGGGgagCUGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 31764 0.7 0.44864
Target:  5'- cCCACCGCcccgUCAUCgaugugcugcgCCUUGACCGCGUc- -3'
miRNA:   3'- -GGUGGCG----AGUGG-----------GGAGCUGGUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 45652 0.7 0.439292
Target:  5'- gCCGCCGUgaaCACCgC-CGuCCGCGUAGu -3'
miRNA:   3'- -GGUGGCGa--GUGGgGaGCuGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 43842 0.7 0.439292
Target:  5'- gCCGCCGCUCGCCaugCCgagCGcACC-CGUGa -3'
miRNA:   3'- -GGUGGCGAGUGG---GGa--GC-UGGuGCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.