miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23251 5' -60 NC_005259.1 + 39995 0.7 0.318272
Target:  5'- --gGGCUgauCGCCGCCGagcaugagGGuCUGACCg -3'
miRNA:   3'- cgaCCGGu--GCGGCGGCaa------CC-GACUGG- -5'
23251 5' -60 NC_005259.1 + 38676 0.7 0.318272
Target:  5'- cGCUG--UugGCCGCCGggucgaGGUUGGCCa -3'
miRNA:   3'- -CGACcgGugCGGCGGCaa----CCGACUGG- -5'
23251 5' -60 NC_005259.1 + 2154 0.7 0.318272
Target:  5'- uGCUGGCCAgcggcgucgaGCCGCCGguugccgaGGUcaugGGCCg -3'
miRNA:   3'- -CGACCGGUg---------CGGCGGCaa------CCGa---CUGG- -5'
23251 5' -60 NC_005259.1 + 35503 0.7 0.310897
Target:  5'- gGUUGGCCccguugcCGCCGCCGccgGGCacACCg -3'
miRNA:   3'- -CGACCGGu------GCGGCGGCaa-CCGacUGG- -5'
23251 5' -60 NC_005259.1 + 37390 0.69 0.390483
Target:  5'- cGCccGCCGCGCCGCCcaUGGUguuguUGACg -3'
miRNA:   3'- -CGacCGGUGCGGCGGcaACCG-----ACUGg -5'
23251 5' -60 NC_005259.1 + 48201 0.69 0.390483
Target:  5'- --cGGgCAUGCCGUCGUagUGGUacGACCg -3'
miRNA:   3'- cgaCCgGUGCGGCGGCA--ACCGa-CUGG- -5'
23251 5' -60 NC_005259.1 + 49100 0.69 0.385347
Target:  5'- -aUGGCCGC-CCGCCGggaucucaagacGCUGAUCa -3'
miRNA:   3'- cgACCGGUGcGGCGGCaac---------CGACUGG- -5'
23251 5' -60 NC_005259.1 + 56444 0.69 0.381949
Target:  5'- aGCgccgGGCCACGCaGCUcagGGUUGACg -3'
miRNA:   3'- -CGa---CCGGUGCGgCGGcaaCCGACUGg -5'
23251 5' -60 NC_005259.1 + 63393 0.69 0.37354
Target:  5'- -aUGGcCCACGCCGaCCaaUGGUUGcCCu -3'
miRNA:   3'- cgACC-GGUGCGGC-GGcaACCGACuGG- -5'
23251 5' -60 NC_005259.1 + 67170 0.69 0.37354
Target:  5'- gGC-GGCCAUGCCGCCGaUGauGCccGCCu -3'
miRNA:   3'- -CGaCCGGUGCGGCGGCaAC--CGacUGG- -5'
23251 5' -60 NC_005259.1 + 66636 0.69 0.365257
Target:  5'- cCUGGCCACcgcucggauuGCUGCCGgucGGCgGugCu -3'
miRNA:   3'- cGACCGGUG----------CGGCGGCaa-CCGaCugG- -5'
23251 5' -60 NC_005259.1 + 43734 0.69 0.362798
Target:  5'- gGC-GGCCAUGCCGCCGagccgGGCaacaucggaaguguUGAgCa -3'
miRNA:   3'- -CGaCCGGUGCGGCGGCaa---CCG--------------ACUgG- -5'
23251 5' -60 NC_005259.1 + 6944 0.69 0.362798
Target:  5'- --aGGCCGagcuCGCCGCCGacGGCauccacacccucgaUGACCu -3'
miRNA:   3'- cgaCCGGU----GCGGCGGCaaCCG--------------ACUGG- -5'
23251 5' -60 NC_005259.1 + 39508 0.69 0.357103
Target:  5'- -aUGGCCGCGCCGCU---GGCc-ACCa -3'
miRNA:   3'- cgACCGGUGCGGCGGcaaCCGacUGG- -5'
23251 5' -60 NC_005259.1 + 13011 0.69 0.349077
Target:  5'- --cGGCUACGCCGCCGcccGGCc--CCa -3'
miRNA:   3'- cgaCCGGUGCGGCGGCaa-CCGacuGG- -5'
23251 5' -60 NC_005259.1 + 43955 0.68 0.434967
Target:  5'- gGCgaugGGCgGgGCCGCCGc---CUGACCg -3'
miRNA:   3'- -CGa---CCGgUgCGGCGGCaaccGACUGG- -5'
23251 5' -60 NC_005259.1 + 56172 0.68 0.416819
Target:  5'- cGUUGGCCACGgUGCCGacauacgcgUUGcgcgaGCUGugCu -3'
miRNA:   3'- -CGACCGGUGCgGCGGC---------AAC-----CGACugG- -5'
23251 5' -60 NC_005259.1 + 1369 0.68 0.40792
Target:  5'- cGCUcGCCGCGCCGCCc---GCgaGGCCc -3'
miRNA:   3'- -CGAcCGGUGCGGCGGcaacCGa-CUGG- -5'
23251 5' -60 NC_005259.1 + 45013 0.68 0.39914
Target:  5'- cGCcggGGCCGCGCCGCCcugcuucaUGaGCUGcucgcgguACCg -3'
miRNA:   3'- -CGa--CCGGUGCGGCGGca------AC-CGAC--------UGG- -5'
23251 5' -60 NC_005259.1 + 55526 0.68 0.434967
Target:  5'- aCUGuGCCcacaGCGCCGCCucGUUGGCgucgagGAUg -3'
miRNA:   3'- cGAC-CGG----UGCGGCGG--CAACCGa-----CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.