miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23251 5' -60 NC_005259.1 + 43025 0.67 0.482247
Target:  5'- --cGGCgAUGCCGCCGa--GCaGGCCg -3'
miRNA:   3'- cgaCCGgUGCGGCGGCaacCGaCUGG- -5'
23251 5' -60 NC_005259.1 + 43322 0.67 0.482247
Target:  5'- cGUUGGCCA--CCGCC-UUGGCgaugGGCa -3'
miRNA:   3'- -CGACCGGUgcGGCGGcAACCGa---CUGg -5'
23251 5' -60 NC_005259.1 + 38718 0.67 0.482247
Target:  5'- gGUUGaCCACcgcuGCCGCCGUaccGGCggUGGCCc -3'
miRNA:   3'- -CGACcGGUG----CGGCGGCAa--CCG--ACUGG- -5'
23251 5' -60 NC_005259.1 + 66837 0.67 0.482247
Target:  5'- uCUGGCuCAUGCCGCCcgcacgGGCcaccGAUCg -3'
miRNA:   3'- cGACCG-GUGCGGCGGcaa---CCGa---CUGG- -5'
23251 5' -60 NC_005259.1 + 20105 0.67 0.481277
Target:  5'- -gUGGUgA-GCCGCCGUcucaaggccgcacUGGCUG-CCg -3'
miRNA:   3'- cgACCGgUgCGGCGGCA-------------ACCGACuGG- -5'
23251 5' -60 NC_005259.1 + 63655 0.67 0.472586
Target:  5'- cGCUGGCCGgGaCGCCGgacaccucgGGC--ACCg -3'
miRNA:   3'- -CGACCGGUgCgGCGGCaa-------CCGacUGG- -5'
23251 5' -60 NC_005259.1 + 4173 0.67 0.463024
Target:  5'- -aUGGUCACGCUGCUGc--GCgaGACCa -3'
miRNA:   3'- cgACCGGUGCGGCGGCaacCGa-CUGG- -5'
23251 5' -60 NC_005259.1 + 47824 0.67 0.463024
Target:  5'- cGCgGGCCAcCGCUGCC----GCUGACg -3'
miRNA:   3'- -CGaCCGGU-GCGGCGGcaacCGACUGg -5'
23251 5' -60 NC_005259.1 + 14876 0.67 0.453565
Target:  5'- cGCUGcCCGagcCGCCGCCGUaUGGUcaaGCCa -3'
miRNA:   3'- -CGACcGGU---GCGGCGGCA-ACCGac-UGG- -5'
23251 5' -60 NC_005259.1 + 57693 0.67 0.453565
Target:  5'- -gUGGCCAgGuuGCCG--GGCUuGCCc -3'
miRNA:   3'- cgACCGGUgCggCGGCaaCCGAcUGG- -5'
23251 5' -60 NC_005259.1 + 19253 0.67 0.452625
Target:  5'- -aUGGCCGCcugccggGCCGcCCGaUGGaagucaUGACCa -3'
miRNA:   3'- cgACCGGUG-------CGGC-GGCaACCg-----ACUGG- -5'
23251 5' -60 NC_005259.1 + 14315 0.68 0.443282
Target:  5'- -aUGGCCgcccucgACGCCGCCGcccGCgugcgGGCCg -3'
miRNA:   3'- cgACCGG-------UGCGGCGGCaacCGa----CUGG- -5'
23251 5' -60 NC_005259.1 + 43955 0.68 0.434967
Target:  5'- gGCgaugGGCgGgGCCGCCGc---CUGACCg -3'
miRNA:   3'- -CGa---CCGgUgCGGCGGCaaccGACUGG- -5'
23251 5' -60 NC_005259.1 + 55526 0.68 0.434967
Target:  5'- aCUGuGCCcacaGCGCCGCCucGUUGGCgucgagGAUg -3'
miRNA:   3'- cGAC-CGG----UGCGGCGG--CAACCGa-----CUGg -5'
23251 5' -60 NC_005259.1 + 56172 0.68 0.416819
Target:  5'- cGUUGGCCACGgUGCCGacauacgcgUUGcgcgaGCUGugCu -3'
miRNA:   3'- -CGACCGGUGCgGCGGC---------AAC-----CGACugG- -5'
23251 5' -60 NC_005259.1 + 1369 0.68 0.40792
Target:  5'- cGCUcGCCGCGCCGCCc---GCgaGGCCc -3'
miRNA:   3'- -CGAcCGGUGCGGCGGcaacCGa-CUGG- -5'
23251 5' -60 NC_005259.1 + 45013 0.68 0.39914
Target:  5'- cGCcggGGCCGCGCCGCCcugcuucaUGaGCUGcucgcgguACCg -3'
miRNA:   3'- -CGa--CCGGUGCGGCGGca------AC-CGAC--------UGG- -5'
23251 5' -60 NC_005259.1 + 35059 0.68 0.39914
Target:  5'- cGCcGGaCACGCCGCCcUUG-CUGACg -3'
miRNA:   3'- -CGaCCgGUGCGGCGGcAACcGACUGg -5'
23251 5' -60 NC_005259.1 + 37390 0.69 0.390483
Target:  5'- cGCccGCCGCGCCGCCcaUGGUguuguUGACg -3'
miRNA:   3'- -CGacCGGUGCGGCGGcaACCG-----ACUGg -5'
23251 5' -60 NC_005259.1 + 48201 0.69 0.390483
Target:  5'- --cGGgCAUGCCGUCGUagUGGUacGACCg -3'
miRNA:   3'- cgaCCgGUGCGGCGGCA--ACCGa-CUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.