miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23252 5' -66.6 NC_005259.1 + 62024 0.67 0.245182
Target:  5'- cGCUCGCGCUGUgUGuCGAcguaguccucGGCCCGCu- -3'
miRNA:   3'- -CGGGCGCGGCGgGC-GUU----------CCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 34669 0.67 0.239442
Target:  5'- cGUCUGaggGuuGCCCGCAuuGGCgCUGCGGa -3'
miRNA:   3'- -CGGGCg--CggCGGGCGUu-CCG-GGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 35645 0.67 0.239442
Target:  5'- -gCCGCuGCCGCUgGCGAggguGGCCagCGCGGu -3'
miRNA:   3'- cgGGCG-CGGCGGgCGUU----CCGG--GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 22469 0.67 0.239442
Target:  5'- cGCCCGCGCgGUCUGacc-GUCCGCa- -3'
miRNA:   3'- -CGGGCGCGgCGGGCguucCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 5702 0.67 0.239442
Target:  5'- uGCUCGUGCCGCCa---AGGCCaGCGc -3'
miRNA:   3'- -CGGGCGCGGCGGgcguUCCGGgCGCu -5'
23252 5' -66.6 NC_005259.1 + 27498 0.67 0.239442
Target:  5'- cGCCCcacGCGCCgaggucgacguGUCCGCAcacgccgucgAGGCCCcacgGCGGg -3'
miRNA:   3'- -CGGG---CGCGG-----------CGGGCGU----------UCCGGG----CGCU- -5'
23252 5' -66.6 NC_005259.1 + 37395 0.67 0.237742
Target:  5'- -gCCGCGCCGCCCaugguguuguugacGCc--GCCCGCc- -3'
miRNA:   3'- cgGGCGCGGCGGG--------------CGuucCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 4278 0.67 0.228299
Target:  5'- cGgCUGCGCUGCCacgaGCAcggaccggcGGCCCuGCGAu -3'
miRNA:   3'- -CgGGCGCGGCGGg---CGUu--------CCGGG-CGCU- -5'
23252 5' -66.6 NC_005259.1 + 48421 0.67 0.222894
Target:  5'- -aCCGCGaCCGCCaccaccgaggCGCGAGGCa-GCGGc -3'
miRNA:   3'- cgGGCGC-GGCGG----------GCGUUCCGggCGCU- -5'
23252 5' -66.6 NC_005259.1 + 58085 0.67 0.222359
Target:  5'- aGCUCGgGCCaGCCCugcucuuGCAGGauGCCCGCu- -3'
miRNA:   3'- -CGGGCgCGG-CGGG-------CGUUC--CGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 35470 0.67 0.217598
Target:  5'- cGCCaGCaCCGCCCGguAGGCCgaaCGAu -3'
miRNA:   3'- -CGGgCGcGGCGGGCguUCCGGgc-GCU- -5'
23252 5' -66.6 NC_005259.1 + 41132 0.68 0.21241
Target:  5'- uGCCCGCGUCGCgCaGCcucAGGCCC-Ca- -3'
miRNA:   3'- -CGGGCGCGGCGgG-CGu--UCCGGGcGcu -5'
23252 5' -66.6 NC_005259.1 + 23887 0.68 0.21241
Target:  5'- aUCCGCuGCCGCCCGagccgccGcGCCCGCc- -3'
miRNA:   3'- cGGGCG-CGGCGGGCguu----C-CGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 45833 0.68 0.21241
Target:  5'- -aCCaUGCCGUCCGCAccaccgGGGCCgGUGGg -3'
miRNA:   3'- cgGGcGCGGCGGGCGU------UCCGGgCGCU- -5'
23252 5' -66.6 NC_005259.1 + 7859 0.68 0.21241
Target:  5'- -aCCGCGCCGaCCC-CGGuGGCCCGa-- -3'
miRNA:   3'- cgGGCGCGGC-GGGcGUU-CCGGGCgcu -5'
23252 5' -66.6 NC_005259.1 + 21441 0.68 0.207328
Target:  5'- gGCgUGCacauggagaacGCUGCCCGUGAGGCuuugaagccgauCCGCGAa -3'
miRNA:   3'- -CGgGCG-----------CGGCGGGCGUUCCG------------GGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 4431 0.68 0.207328
Target:  5'- cGCCCGaggucgaGCCGCCCGUGcgaguGGGCa-GCGu -3'
miRNA:   3'- -CGGGCg------CGGCGGGCGU-----UCCGggCGCu -5'
23252 5' -66.6 NC_005259.1 + 57808 0.68 0.207328
Target:  5'- cCUCGaCGCCGCCCGCAcgcauGGCCagauCGGc -3'
miRNA:   3'- cGGGC-GCGGCGGGCGUu----CCGGgc--GCU- -5'
23252 5' -66.6 NC_005259.1 + 38814 0.68 0.207328
Target:  5'- cGCCCGCGcCCGCgaugaCCGagucgauGGCCUGCu- -3'
miRNA:   3'- -CGGGCGC-GGCG-----GGCguu----CCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 38726 0.68 0.207328
Target:  5'- -aCCGCuGCCGCCguaccgGCGGuGGCCCGCc- -3'
miRNA:   3'- cgGGCG-CGGCGGg-----CGUU-CCGGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.