Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23253 | 3' | -58.7 | NC_005259.1 | + | 36484 | 1.11 | 0.000563 |
Target: 5'- cCCGAUCUCGCGGUCGACGGGCAGCUCu -3' miRNA: 3'- -GGCUAGAGCGCCAGCUGCCCGUCGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 40119 | 0.75 | 0.185129 |
Target: 5'- aUGcgCUCGUGGaaUUGGCGGGCgAGCUCg -3' miRNA: 3'- gGCuaGAGCGCC--AGCUGCCCG-UCGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 41846 | 0.75 | 0.205016 |
Target: 5'- cUCGAcCUCGaCGGugucccacUCGACGGGCAGCa- -3' miRNA: 3'- -GGCUaGAGC-GCC--------AGCUGCCCGUCGag -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 45185 | 0.74 | 0.221123 |
Target: 5'- gCCGAggUCagCGCGGUgaUGACGGGCgAGUUCg -3' miRNA: 3'- -GGCU--AGa-GCGCCA--GCUGCCCG-UCGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 58921 | 0.72 | 0.289556 |
Target: 5'- gCGGUCUUGUcGUCGGCGGGC-GCg- -3' miRNA: 3'- gGCUAGAGCGcCAGCUGCCCGuCGag -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 58789 | 0.72 | 0.289556 |
Target: 5'- gCCGGUCgagGCGGugauugccUCGGCGGGCucgcgcuGCUCg -3' miRNA: 3'- -GGCUAGag-CGCC--------AGCUGCCCGu------CGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 17339 | 0.72 | 0.289556 |
Target: 5'- gCCGGUCaacgUCGCcGUCGAgGucGGCGGCUCg -3' miRNA: 3'- -GGCUAG----AGCGcCAGCUgC--CCGUCGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 19202 | 0.72 | 0.310897 |
Target: 5'- gCGAgCUCGUGGU--GCGGGCGGCg- -3' miRNA: 3'- gGCUaGAGCGCCAgcUGCCCGUCGag -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 53896 | 0.71 | 0.357103 |
Target: 5'- cUCGAUUuccuuuuggUCGCGGaaacCGACGGGCAGaUCg -3' miRNA: 3'- -GGCUAG---------AGCGCCa---GCUGCCCGUCgAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 61028 | 0.7 | 0.37354 |
Target: 5'- cUCGGUggCGgcgaGGUCGAccgaCGGGCGGCUCa -3' miRNA: 3'- -GGCUAgaGCg---CCAGCU----GCCCGUCGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 62839 | 0.7 | 0.390483 |
Target: 5'- -aGGUCgagcgCGCGGUUGACGaGCAGC-Cg -3' miRNA: 3'- ggCUAGa----GCGCCAGCUGCcCGUCGaG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 29883 | 0.7 | 0.39914 |
Target: 5'- cCCGAUgUCGaGGUCGGCaagcacaagGGGUGGCUg -3' miRNA: 3'- -GGCUAgAGCgCCAGCUG---------CCCGUCGAg -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 42535 | 0.7 | 0.39914 |
Target: 5'- cCCGAUgggcacCGaGGU-GGCGGGCAGCUCg -3' miRNA: 3'- -GGCUAga----GCgCCAgCUGCCCGUCGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 3298 | 0.7 | 0.40792 |
Target: 5'- gCCGGUCccucggcgagCGCuGcGUCGAcgugagcgcCGGGCAGCUCu -3' miRNA: 3'- -GGCUAGa---------GCG-C-CAGCU---------GCCCGUCGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 49584 | 0.69 | 0.425836 |
Target: 5'- aCCGG-CggGCGGggucagcaccUCGAccuCGGGCAGCUCa -3' miRNA: 3'- -GGCUaGagCGCC----------AGCU---GCCCGUCGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 10482 | 0.69 | 0.429475 |
Target: 5'- aCGAUCuuggggUCGUGGUUGuugggguuguccggcACGGGCcAGCUCc -3' miRNA: 3'- gGCUAG------AGCGCCAGC---------------UGCCCG-UCGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 67821 | 0.69 | 0.434967 |
Target: 5'- cCCGAUCUUGUccUCGACcGGCAGCcCg -3' miRNA: 3'- -GGCUAGAGCGccAGCUGcCCGUCGaG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 67944 | 0.69 | 0.453565 |
Target: 5'- aUGAUCUUGCGGU--GCGGGUuguGCUg -3' miRNA: 3'- gGCUAGAGCGCCAgcUGCCCGu--CGAg -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 61905 | 0.68 | 0.501847 |
Target: 5'- -gGGUUaggUCGcCGGUCGuCGucGGCAGCUCg -3' miRNA: 3'- ggCUAG---AGC-GCCAGCuGC--CCGUCGAG- -5' |
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23253 | 3' | -58.7 | NC_005259.1 | + | 17519 | 0.68 | 0.511777 |
Target: 5'- uCCGAgCUCGUGGgcacacagcgaCGGCGGGCAuuUCu -3' miRNA: 3'- -GGCUaGAGCGCCa----------GCUGCCCGUcgAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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