miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23253 5' -57.1 NC_005259.1 + 39402 0.66 0.69344
Target:  5'- cUUGGuCCAcCCCGagGCGGUGccgGACACc -3'
miRNA:   3'- -AACUuGGU-GGGCg-CGCCACa--CUGUGc -5'
23253 5' -57.1 NC_005259.1 + 16104 0.66 0.682819
Target:  5'- -aGAugUACCgGCGCGGaaUGAC-CGa -3'
miRNA:   3'- aaCUugGUGGgCGCGCCacACUGuGC- -5'
23253 5' -57.1 NC_005259.1 + 36874 0.66 0.682819
Target:  5'- cUGGcACCGCCCGCGCcgacgacgccGGUGagcgccccacUGACGgGg -3'
miRNA:   3'- aACU-UGGUGGGCGCG----------CCAC----------ACUGUgC- -5'
23253 5' -57.1 NC_005259.1 + 18727 0.66 0.682819
Target:  5'- -cGGGCCGCCCGgcaucgguaaguCGuCGGUGgugcucGACAUGg -3'
miRNA:   3'- aaCUUGGUGGGC------------GC-GCCACa-----CUGUGC- -5'
23253 5' -57.1 NC_005259.1 + 30019 0.66 0.661448
Target:  5'- gUGAccACCGCCgGgGCGGUGgGACu-- -3'
miRNA:   3'- aACU--UGGUGGgCgCGCCACaCUGugc -5'
23253 5' -57.1 NC_005259.1 + 38869 0.66 0.650718
Target:  5'- --cGACgCGCCCGCaaugGCGGUGUugacGACGCu -3'
miRNA:   3'- aacUUG-GUGGGCG----CGCCACA----CUGUGc -5'
23253 5' -57.1 NC_005259.1 + 18298 0.66 0.639973
Target:  5'- -cGAGCCGCCguucUGCcCGGUGUgcGACACc -3'
miRNA:   3'- aaCUUGGUGG----GCGcGCCACA--CUGUGc -5'
23253 5' -57.1 NC_005259.1 + 6679 0.67 0.62922
Target:  5'- -cGAGCUGCCCGCuuccaagaGUGGcGcGACACGa -3'
miRNA:   3'- aaCUUGGUGGGCG--------CGCCaCaCUGUGC- -5'
23253 5' -57.1 NC_005259.1 + 34585 0.67 0.61847
Target:  5'- -cGGACagGCagaCGCGCGGUGUcGACAUc -3'
miRNA:   3'- aaCUUGg-UGg--GCGCGCCACA-CUGUGc -5'
23253 5' -57.1 NC_005259.1 + 51653 0.67 0.607731
Target:  5'- -cGAACgggUugCCGCGCGGgcgcgucgGGCACGg -3'
miRNA:   3'- aaCUUG---GugGGCGCGCCaca-----CUGUGC- -5'
23253 5' -57.1 NC_005259.1 + 33567 0.67 0.606658
Target:  5'- -aGAACCGCCCGaacuugaccgcguCGCGGgccaccgaGGCGCGg -3'
miRNA:   3'- aaCUUGGUGGGC-------------GCGCCaca-----CUGUGC- -5'
23253 5' -57.1 NC_005259.1 + 56996 0.67 0.593802
Target:  5'- cUGAGCUGCCCgugcgagcaccucaGCGCGGcucGGCGCGg -3'
miRNA:   3'- aACUUGGUGGG--------------CGCGCCacaCUGUGC- -5'
23253 5' -57.1 NC_005259.1 + 43246 0.67 0.586322
Target:  5'- cUGAcgauGCCGCCCGCGCcgGGUGccugagaguUGAC-CGc -3'
miRNA:   3'- aACU----UGGUGGGCGCG--CCAC---------ACUGuGC- -5'
23253 5' -57.1 NC_005259.1 + 4488 0.67 0.575669
Target:  5'- gUGGACCAUggugaucgccaCCGCGcCGGgaGUGGCGCu -3'
miRNA:   3'- aACUUGGUG-----------GGCGC-GCCa-CACUGUGc -5'
23253 5' -57.1 NC_005259.1 + 37744 0.68 0.554502
Target:  5'- -cGAGCUGCUCgaugaccaGCGCGGUGgccccugcgGGCACGa -3'
miRNA:   3'- aaCUUGGUGGG--------CGCGCCACa--------CUGUGC- -5'
23253 5' -57.1 NC_005259.1 + 19841 0.69 0.512927
Target:  5'- -cGGcuGCUGCCgCGCuCGGUGUGGCGCu -3'
miRNA:   3'- aaCU--UGGUGG-GCGcGCCACACUGUGc -5'
23253 5' -57.1 NC_005259.1 + 53184 0.69 0.502729
Target:  5'- ---cGCCGCCCGuCGCGGUGUccccGGCGa- -3'
miRNA:   3'- aacuUGGUGGGC-GCGCCACA----CUGUgc -5'
23253 5' -57.1 NC_005259.1 + 36046 0.7 0.414595
Target:  5'- -cGAgGCCACCCGCGCGagcaccaccugcuGUGUGcucguCGCGg -3'
miRNA:   3'- aaCU-UGGUGGGCGCGC-------------CACACu----GUGC- -5'
23253 5' -57.1 NC_005259.1 + 19104 0.71 0.378964
Target:  5'- -cGAACuCACCgGCGCuGGUGUGugcgucgugcaccACACGa -3'
miRNA:   3'- aaCUUG-GUGGgCGCG-CCACAC-------------UGUGC- -5'
23253 5' -57.1 NC_005259.1 + 33894 0.71 0.362774
Target:  5'- -gGAACCACCCGCGCGacg-GGC-CGa -3'
miRNA:   3'- aaCUUGGUGGGCGCGCcacaCUGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.