Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23253 | 5' | -57.1 | NC_005259.1 | + | 22465 | 0.71 | 0.362774 |
Target: 5'- --cGugCGCCCGCGCGGUcUGAC-CGu -3' miRNA: 3'- aacUugGUGGGCGCGCCAcACUGuGC- -5' |
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23253 | 5' | -57.1 | NC_005259.1 | + | 19104 | 0.71 | 0.378964 |
Target: 5'- -cGAACuCACCgGCGCuGGUGUGugcgucgugcaccACACGa -3' miRNA: 3'- aaCUUG-GUGGgCGCG-CCACAC-------------UGUGC- -5' |
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23253 | 5' | -57.1 | NC_005259.1 | + | 42492 | 0.72 | 0.330287 |
Target: 5'- -aGAGCCgugACCCGUccgGCGGUGUGGCcaGCa -3' miRNA: 3'- aaCUUGG---UGGGCG---CGCCACACUG--UGc -5' |
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23253 | 5' | -57.1 | NC_005259.1 | + | 55459 | 0.76 | 0.18027 |
Target: 5'- -aGGGCCACCCGUGCaGGgGUGuACGCGu -3' miRNA: 3'- aaCUUGGUGGGCGCG-CCaCAC-UGUGC- -5' |
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23253 | 5' | -57.1 | NC_005259.1 | + | 4441 | 0.77 | 0.162091 |
Target: 5'- -cGAGCCGCCCGUGCGaGUG-GGCAgCGu -3' miRNA: 3'- aaCUUGGUGGGCGCGC-CACaCUGU-GC- -5' |
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23253 | 5' | -57.1 | NC_005259.1 | + | 36520 | 1.05 | 0.001551 |
Target: 5'- cUUGAACCACCCGCGCGGUGUGACACGc -3' miRNA: 3'- -AACUUGGUGGGCGCGCCACACUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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