miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 60516 0.67 0.50621
Target:  5'- gUCGuaguGCGCCaUGGCCGgGC-CGGGaCGCa -3'
miRNA:   3'- -GGCu---CGUGGaACCGGU-CGcGCUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 47858 0.68 0.420608
Target:  5'- uUCGAGCGCCUuguUGGCCucuuccagcuuGGC-CGGGUcaGCg -3'
miRNA:   3'- -GGCUCGUGGA---ACCGG-----------UCGcGCUCG--CG- -5'
23254 3' -59.6 NC_005259.1 + 32529 0.68 0.429692
Target:  5'- gCGGGCggcaggcuugACCUugcuguUGGCC-GCcccgGCGAGCGCg -3'
miRNA:   3'- gGCUCG----------UGGA------ACCGGuCG----CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 51775 0.68 0.429692
Target:  5'- gCGAGCGCCUUgaGGUauuCGGCGCucGGCGg -3'
miRNA:   3'- gGCUCGUGGAA--CCG---GUCGCGc-UCGCg -5'
23254 3' -59.6 NC_005259.1 + 45165 0.68 0.429692
Target:  5'- ---cGC-CCUUGGCCuuguuGCGCGccgaggucAGCGCg -3'
miRNA:   3'- ggcuCGuGGAACCGGu----CGCGC--------UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 32448 0.68 0.43612
Target:  5'- -aGGGUccaucAUCUUGGCCAGCagaguuucguacucGcCGGGCGCg -3'
miRNA:   3'- ggCUCG-----UGGAACCGGUCG--------------C-GCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 26502 0.68 0.438891
Target:  5'- gCGAGCucGCCgc--CCGGCGagaaGAGCGCg -3'
miRNA:   3'- gGCUCG--UGGaaccGGUCGCg---CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 44024 0.68 0.461417
Target:  5'- uUCGAGCgcggacugaacaccgGCCUUGacgaCCGGCuCGAGUGCg -3'
miRNA:   3'- -GGCUCG---------------UGGAACc---GGUCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 64917 0.68 0.448202
Target:  5'- gCGAGCGugaggaugaCgaGuGCCAGCGCGAGgGUg -3'
miRNA:   3'- gGCUCGUg--------GaaC-CGGUCGCGCUCgCG- -5'
23254 3' -59.6 NC_005259.1 + 14142 0.68 0.448202
Target:  5'- aCGAGUGCCUguGCgAGCGCGucGUGUg -3'
miRNA:   3'- gGCUCGUGGAacCGgUCGCGCu-CGCG- -5'
23254 3' -59.6 NC_005259.1 + 21230 0.68 0.448202
Target:  5'- gCCGAGUacGCCUcGGCagcGCGCGGGUu- -3'
miRNA:   3'- -GGCUCG--UGGAaCCGgu-CGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 36004 0.68 0.451956
Target:  5'- gCCGGacuGCACCgaggUGGCCAGCGaggucgacaUGAucagcgaggccacccGCGCg -3'
miRNA:   3'- -GGCU---CGUGGa---ACCGGUCGC---------GCU---------------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 23284 0.68 0.454783
Target:  5'- aCCGGGCGCggUGGuuggguaucgggguCCGGCGCGgucGGUGUc -3'
miRNA:   3'- -GGCUCGUGgaACC--------------GGUCGCGC---UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 33913 0.68 0.45762
Target:  5'- gCCGAG-ACC--GGCCacGGUGCGAGCa- -3'
miRNA:   3'- -GGCUCgUGGaaCCGG--UCGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 52141 0.68 0.45762
Target:  5'- uCCG-GCACCUcgccgaGGCaggCAGCGCcGAGgCGCu -3'
miRNA:   3'- -GGCuCGUGGAa-----CCG---GUCGCG-CUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 54226 0.69 0.402792
Target:  5'- aCCGGGCAUag-GGUCGGUccuccuaaGuCGGGCGCg -3'
miRNA:   3'- -GGCUCGUGgaaCCGGUCG--------C-GCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 17847 0.69 0.402792
Target:  5'- gCCGAGgcCACCccgUGGUCAGCGauccuuGAGcCGCu -3'
miRNA:   3'- -GGCUC--GUGGa--ACCGGUCGCg-----CUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 32908 0.69 0.402792
Target:  5'- gUGAGcCACCc-GGCCcGCuCGGGCGCg -3'
miRNA:   3'- gGCUC-GUGGaaCCGGuCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 18321 0.69 0.402792
Target:  5'- gCGA-CACCgaGGCCGGUGCGuuCGUg -3'
miRNA:   3'- gGCUcGUGGaaCCGGUCGCGCucGCG- -5'
23254 3' -59.6 NC_005259.1 + 15570 0.69 0.402792
Target:  5'- gUGGcCACCcucggGGCCAGCGCGAcGgGCc -3'
miRNA:   3'- gGCUcGUGGaa---CCGGUCGCGCU-CgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.