Results 41 - 60 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23254 | 3' | -59.6 | NC_005259.1 | + | 18321 | 0.69 | 0.402792 |
Target: 5'- gCGA-CACCgaGGCCGGUGCGuuCGUg -3' miRNA: 3'- gGCUcGUGGaaCCGGUCGCGCucGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 32908 | 0.69 | 0.402792 |
Target: 5'- gUGAGcCACCc-GGCCcGCuCGGGCGCg -3' miRNA: 3'- gGCUC-GUGGaaCCGGuCGcGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 17847 | 0.69 | 0.402792 |
Target: 5'- gCCGAGgcCACCccgUGGUCAGCGauccuuGAGcCGCu -3' miRNA: 3'- -GGCUC--GUGGa--ACCGGUCGCg-----CUC-GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 3310 | 0.69 | 0.402792 |
Target: 5'- gCGAGCGCUgc-GUCGaCGUGAGCGCc -3' miRNA: 3'- gGCUCGUGGaacCGGUcGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 54226 | 0.69 | 0.402792 |
Target: 5'- aCCGGGCAUag-GGUCGGUccuccuaaGuCGGGCGCg -3' miRNA: 3'- -GGCUCGUGgaaCCGGUCG--------C-GCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 67976 | 0.69 | 0.385462 |
Target: 5'- gCGcAGCGgCgUGGCCAccGcCGCGAGCGUc -3' miRNA: 3'- gGC-UCGUgGaACCGGU--C-GCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 46557 | 0.69 | 0.385462 |
Target: 5'- gCCGAccGCGCCUaUGGUCgcGGCGuCGAccGCGCc -3' miRNA: 3'- -GGCU--CGUGGA-ACCGG--UCGC-GCU--CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 30554 | 0.69 | 0.360409 |
Target: 5'- aCCGAGCGguuguugacgcCCUUGGCC-GCaGU-AGCGCu -3' miRNA: 3'- -GGCUCGU-----------GGAACCGGuCG-CGcUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 31167 | 0.69 | 0.360409 |
Target: 5'- aUCGAGCucgcCCUUGaGCCAGUcgGCGAGgaUGCc -3' miRNA: 3'- -GGCUCGu---GGAAC-CGGUCG--CGCUC--GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 44969 | 0.69 | 0.368633 |
Target: 5'- aUCGGGaUGCCgagGGCCGGUGCGAcUGCc -3' miRNA: 3'- -GGCUC-GUGGaa-CCGGUCGCGCUcGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 52389 | 0.69 | 0.368633 |
Target: 5'- gCGcAGCcuGCCUcgGGCCaucgaGGUGUGGGCGCu -3' miRNA: 3'- gGC-UCG--UGGAa-CCGG-----UCGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 57311 | 0.69 | 0.368633 |
Target: 5'- aUCGAGCACCggcgGuGUCGGUGUGGucauguGCGCu -3' miRNA: 3'- -GGCUCGUGGaa--C-CGGUCGCGCU------CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 58562 | 0.69 | 0.368633 |
Target: 5'- cUCGGGCGgUUgGGCCGGauCGCG-GCGCg -3' miRNA: 3'- -GGCUCGUgGAaCCGGUC--GCGCuCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 50126 | 0.69 | 0.376984 |
Target: 5'- aCGGGCACCgccacacgcgaUUGGUUGGCGauccGGCGCg -3' miRNA: 3'- gGCUCGUGG-----------AACCGGUCGCgc--UCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 40648 | 0.69 | 0.376984 |
Target: 5'- gCCGAGaaagucaugcuCGCCga-G-CAGCGCGAGCGCc -3' miRNA: 3'- -GGCUC-----------GUGGaacCgGUCGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 32448 | 0.68 | 0.43612 |
Target: 5'- -aGGGUccaucAUCUUGGCCAGCagaguuucguacucGcCGGGCGCg -3' miRNA: 3'- ggCUCG-----UGGAACCGGUCG--------------C-GCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 45165 | 0.68 | 0.429692 |
Target: 5'- ---cGC-CCUUGGCCuuguuGCGCGccgaggucAGCGCg -3' miRNA: 3'- ggcuCGuGGAACCGGu----CGCGC--------UCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 51775 | 0.68 | 0.429692 |
Target: 5'- gCGAGCGCCUUgaGGUauuCGGCGCucGGCGg -3' miRNA: 3'- gGCUCGUGGAA--CCG---GUCGCGc-UCGCg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 32529 | 0.68 | 0.429692 |
Target: 5'- gCGGGCggcaggcuugACCUugcuguUGGCC-GCcccgGCGAGCGCg -3' miRNA: 3'- gGCUCG----------UGGA------ACCGGuCG----CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 26502 | 0.68 | 0.438891 |
Target: 5'- gCGAGCucGCCgc--CCGGCGagaaGAGCGCg -3' miRNA: 3'- gGCUCG--UGGaaccGGUCGCg---CUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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