Results 61 - 80 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23254 | 3' | -59.6 | NC_005259.1 | + | 44024 | 0.68 | 0.461417 |
Target: 5'- uUCGAGCgcggacugaacaccgGCCUUGacgaCCGGCuCGAGUGCg -3' miRNA: 3'- -GGCUCG---------------UGGAACc---GGUCGcGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 14142 | 0.68 | 0.448202 |
Target: 5'- aCGAGUGCCUguGCgAGCGCGucGUGUg -3' miRNA: 3'- gGCUCGUGGAacCGgUCGCGCu-CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 64917 | 0.68 | 0.448202 |
Target: 5'- gCGAGCGugaggaugaCgaGuGCCAGCGCGAGgGUg -3' miRNA: 3'- gGCUCGUg--------GaaC-CGGUCGCGCUCgCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 47858 | 0.68 | 0.420608 |
Target: 5'- uUCGAGCGCCUuguUGGCCucuuccagcuuGGC-CGGGUcaGCg -3' miRNA: 3'- -GGCUCGUGGA---ACCGG-----------UCGcGCUCG--CG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 32529 | 0.68 | 0.429692 |
Target: 5'- gCGGGCggcaggcuugACCUugcuguUGGCC-GCcccgGCGAGCGCg -3' miRNA: 3'- gGCUCG----------UGGA------ACCGGuCG----CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 51775 | 0.68 | 0.429692 |
Target: 5'- gCGAGCGCCUUgaGGUauuCGGCGCucGGCGg -3' miRNA: 3'- gGCUCGUGGAA--CCG---GUCGCGc-UCGCg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 45165 | 0.68 | 0.429692 |
Target: 5'- ---cGC-CCUUGGCCuuguuGCGCGccgaggucAGCGCg -3' miRNA: 3'- ggcuCGuGGAACCGGu----CGCGC--------UCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 32448 | 0.68 | 0.43612 |
Target: 5'- -aGGGUccaucAUCUUGGCCAGCagaguuucguacucGcCGGGCGCg -3' miRNA: 3'- ggCUCG-----UGGAACCGGUCG--------------C-GCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 26502 | 0.68 | 0.438891 |
Target: 5'- gCGAGCucGCCgc--CCGGCGagaaGAGCGCg -3' miRNA: 3'- gGCUCG--UGGaaccGGUCGCg---CUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 60516 | 0.67 | 0.50621 |
Target: 5'- gUCGuaguGCGCCaUGGCCGgGC-CGGGaCGCa -3' miRNA: 3'- -GGCu---CGUGGaACCGGU-CGcGCUC-GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 25836 | 0.67 | 0.486491 |
Target: 5'- aCCGGGCcauACCUcgcggaugUGGUacucgauGUGCGGGCGUg -3' miRNA: 3'- -GGCUCG---UGGA--------ACCGgu-----CGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 4600 | 0.67 | 0.486491 |
Target: 5'- aCCGccauaGGCACgCUgucgGGCCgguGGCGCGAGUu- -3' miRNA: 3'- -GGC-----UCGUG-GAa---CCGG---UCGCGCUCGcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 27041 | 0.67 | 0.486491 |
Target: 5'- uUGAGCuugGCCUUGGCCugAGCGaCGgucacGGCGa -3' miRNA: 3'- gGCUCG---UGGAACCGG--UCGC-GC-----UCGCg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 50205 | 0.67 | 0.476769 |
Target: 5'- cCCGcucaAGCGCCgccucGUCaaucucgauccgAGCGCGGGCGCg -3' miRNA: 3'- -GGC----UCGUGGaac--CGG------------UCGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 16498 | 0.67 | 0.476769 |
Target: 5'- cCCGcGCGCa-UGGCCGagagcgaggcGCuGCGAGCGUc -3' miRNA: 3'- -GGCuCGUGgaACCGGU----------CG-CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 15379 | 0.67 | 0.476769 |
Target: 5'- gCGAGCuGCCgcaaccgUGGCC-GCGCacucccaaGGGUGCg -3' miRNA: 3'- gGCUCG-UGGa------ACCGGuCGCG--------CUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 9970 | 0.67 | 0.476769 |
Target: 5'- cCCGAccaccGCACCggucgaggUGGCCAGC-CGGGgacugaucCGCg -3' miRNA: 3'- -GGCU-----CGUGGa-------ACCGGUCGcGCUC--------GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 30940 | 0.67 | 0.476769 |
Target: 5'- aUGAGCAUCUUGGCgAuGuCGcCGAGCa- -3' miRNA: 3'- gGCUCGUGGAACCGgU-C-GC-GCUCGcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 30290 | 0.67 | 0.476769 |
Target: 5'- gUCGAGCuCUacggUGGCCcauuAGacgGCGAGCGCc -3' miRNA: 3'- -GGCUCGuGGa---ACCGG----UCg--CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 7029 | 0.67 | 0.50621 |
Target: 5'- gCCGAGCGCCccGGCgGgguuuuucguuGCGCGAGa-- -3' miRNA: 3'- -GGCUCGUGGaaCCGgU-----------CGCGCUCgcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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