miRNA display CGI


Results 41 - 60 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 52389 0.69 0.368633
Target:  5'- gCGcAGCcuGCCUcgGGCCaucgaGGUGUGGGCGCu -3'
miRNA:   3'- gGC-UCG--UGGAa-CCGG-----UCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 57311 0.69 0.368633
Target:  5'- aUCGAGCACCggcgGuGUCGGUGUGGucauguGCGCu -3'
miRNA:   3'- -GGCUCGUGGaa--C-CGGUCGCGCU------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 58562 0.69 0.368633
Target:  5'- cUCGGGCGgUUgGGCCGGauCGCG-GCGCg -3'
miRNA:   3'- -GGCUCGUgGAaCCGGUC--GCGCuCGCG- -5'
23254 3' -59.6 NC_005259.1 + 50126 0.69 0.376984
Target:  5'- aCGGGCACCgccacacgcgaUUGGUUGGCGauccGGCGCg -3'
miRNA:   3'- gGCUCGUGG-----------AACCGGUCGCgc--UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 40648 0.69 0.376984
Target:  5'- gCCGAGaaagucaugcuCGCCga-G-CAGCGCGAGCGCc -3'
miRNA:   3'- -GGCUC-----------GUGGaacCgGUCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 67976 0.69 0.385462
Target:  5'- gCGcAGCGgCgUGGCCAccGcCGCGAGCGUc -3'
miRNA:   3'- gGC-UCGUgGaACCGGU--C-GCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 46557 0.69 0.385462
Target:  5'- gCCGAccGCGCCUaUGGUCgcGGCGuCGAccGCGCc -3'
miRNA:   3'- -GGCU--CGUGGA-ACCGG--UCGC-GCU--CGCG- -5'
23254 3' -59.6 NC_005259.1 + 59381 0.69 0.394065
Target:  5'- aCGccGCACCgu-GCCuccgcGCGCGAGCGUg -3'
miRNA:   3'- gGCu-CGUGGaacCGGu----CGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 1319 0.69 0.401914
Target:  5'- gUGAGCGCCaUGGUCgauuucgAGauCGAGCGCa -3'
miRNA:   3'- gGCUCGUGGaACCGG-------UCgcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 54226 0.69 0.402792
Target:  5'- aCCGGGCAUag-GGUCGGUccuccuaaGuCGGGCGCg -3'
miRNA:   3'- -GGCUCGUGgaaCCGGUCG--------C-GCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 3310 0.69 0.402792
Target:  5'- gCGAGCGCUgc-GUCGaCGUGAGCGCc -3'
miRNA:   3'- gGCUCGUGGaacCGGUcGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 17847 0.69 0.402792
Target:  5'- gCCGAGgcCACCccgUGGUCAGCGauccuuGAGcCGCu -3'
miRNA:   3'- -GGCUC--GUGGa--ACCGGUCGCg-----CUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 32908 0.69 0.402792
Target:  5'- gUGAGcCACCc-GGCCcGCuCGGGCGCg -3'
miRNA:   3'- gGCUC-GUGGaaCCGGuCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 18321 0.69 0.402792
Target:  5'- gCGA-CACCgaGGCCGGUGCGuuCGUg -3'
miRNA:   3'- gGCUcGUGGaaCCGGUCGCGCucGCG- -5'
23254 3' -59.6 NC_005259.1 + 15570 0.69 0.402792
Target:  5'- gUGGcCACCcucggGGCCAGCGCGAcGgGCc -3'
miRNA:   3'- gGCUcGUGGaa---CCGGUCGCGCU-CgCG- -5'
23254 3' -59.6 NC_005259.1 + 47858 0.68 0.420608
Target:  5'- uUCGAGCGCCUuguUGGCCucuuccagcuuGGC-CGGGUcaGCg -3'
miRNA:   3'- -GGCUCGUGGA---ACCGG-----------UCGcGCUCG--CG- -5'
23254 3' -59.6 NC_005259.1 + 32529 0.68 0.429692
Target:  5'- gCGGGCggcaggcuugACCUugcuguUGGCC-GCcccgGCGAGCGCg -3'
miRNA:   3'- gGCUCG----------UGGA------ACCGGuCG----CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 51775 0.68 0.429692
Target:  5'- gCGAGCGCCUUgaGGUauuCGGCGCucGGCGg -3'
miRNA:   3'- gGCUCGUGGAA--CCG---GUCGCGc-UCGCg -5'
23254 3' -59.6 NC_005259.1 + 45165 0.68 0.429692
Target:  5'- ---cGC-CCUUGGCCuuguuGCGCGccgaggucAGCGCg -3'
miRNA:   3'- ggcuCGuGGAACCGGu----CGCGC--------UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 32448 0.68 0.43612
Target:  5'- -aGGGUccaucAUCUUGGCCAGCagaguuucguacucGcCGGGCGCg -3'
miRNA:   3'- ggCUCG-----UGGAACCGGUCG--------------C-GCUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.