miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 26502 0.68 0.438891
Target:  5'- gCGAGCucGCCgc--CCGGCGagaaGAGCGCg -3'
miRNA:   3'- gGCUCG--UGGaaccGGUCGCg---CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 21230 0.68 0.448202
Target:  5'- gCCGAGUacGCCUcGGCagcGCGCGGGUu- -3'
miRNA:   3'- -GGCUCG--UGGAaCCGgu-CGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 14142 0.68 0.448202
Target:  5'- aCGAGUGCCUguGCgAGCGCGucGUGUg -3'
miRNA:   3'- gGCUCGUGGAacCGgUCGCGCu-CGCG- -5'
23254 3' -59.6 NC_005259.1 + 64917 0.68 0.448202
Target:  5'- gCGAGCGugaggaugaCgaGuGCCAGCGCGAGgGUg -3'
miRNA:   3'- gGCUCGUg--------GaaC-CGGUCGCGCUCgCG- -5'
23254 3' -59.6 NC_005259.1 + 36004 0.68 0.451956
Target:  5'- gCCGGacuGCACCgaggUGGCCAGCGaggucgacaUGAucagcgaggccacccGCGCg -3'
miRNA:   3'- -GGCU---CGUGGa---ACCGGUCGC---------GCU---------------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 23284 0.68 0.454783
Target:  5'- aCCGGGCGCggUGGuuggguaucgggguCCGGCGCGgucGGUGUc -3'
miRNA:   3'- -GGCUCGUGgaACC--------------GGUCGCGC---UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 52141 0.68 0.45762
Target:  5'- uCCG-GCACCUcgccgaGGCaggCAGCGCcGAGgCGCu -3'
miRNA:   3'- -GGCuCGUGGAa-----CCG---GUCGCG-CUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 33913 0.68 0.45762
Target:  5'- gCCGAG-ACC--GGCCacGGUGCGAGCa- -3'
miRNA:   3'- -GGCUCgUGGaaCCGG--UCGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 44024 0.68 0.461417
Target:  5'- uUCGAGCgcggacugaacaccgGCCUUGacgaCCGGCuCGAGUGCg -3'
miRNA:   3'- -GGCUCG---------------UGGAACc---GGUCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 50205 0.67 0.476769
Target:  5'- cCCGcucaAGCGCCgccucGUCaaucucgauccgAGCGCGGGCGCg -3'
miRNA:   3'- -GGC----UCGUGGaac--CGG------------UCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 16498 0.67 0.476769
Target:  5'- cCCGcGCGCa-UGGCCGagagcgaggcGCuGCGAGCGUc -3'
miRNA:   3'- -GGCuCGUGgaACCGGU----------CG-CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 15379 0.67 0.476769
Target:  5'- gCGAGCuGCCgcaaccgUGGCC-GCGCacucccaaGGGUGCg -3'
miRNA:   3'- gGCUCG-UGGa------ACCGGuCGCG--------CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 9970 0.67 0.476769
Target:  5'- cCCGAccaccGCACCggucgaggUGGCCAGC-CGGGgacugaucCGCg -3'
miRNA:   3'- -GGCU-----CGUGGa-------ACCGGUCGcGCUC--------GCG- -5'
23254 3' -59.6 NC_005259.1 + 30940 0.67 0.476769
Target:  5'- aUGAGCAUCUUGGCgAuGuCGcCGAGCa- -3'
miRNA:   3'- gGCUCGUGGAACCGgU-C-GC-GCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 30290 0.67 0.476769
Target:  5'- gUCGAGCuCUacggUGGCCcauuAGacgGCGAGCGCc -3'
miRNA:   3'- -GGCUCGuGGa---ACCGG----UCg--CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 3868 0.67 0.476769
Target:  5'- gUCGAGCGCCUcGaGCCcaccccgcAGCGCGAcaucGuCGCc -3'
miRNA:   3'- -GGCUCGUGGAaC-CGG--------UCGCGCU----C-GCG- -5'
23254 3' -59.6 NC_005259.1 + 27041 0.67 0.486491
Target:  5'- uUGAGCuugGCCUUGGCCugAGCGaCGgucacGGCGa -3'
miRNA:   3'- gGCUCG---UGGAACCGG--UCGC-GC-----UCGCg -5'
23254 3' -59.6 NC_005259.1 + 4600 0.67 0.486491
Target:  5'- aCCGccauaGGCACgCUgucgGGCCgguGGCGCGAGUu- -3'
miRNA:   3'- -GGC-----UCGUG-GAa---CCGG---UCGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 25836 0.67 0.486491
Target:  5'- aCCGGGCcauACCUcgcggaugUGGUacucgauGUGCGGGCGUg -3'
miRNA:   3'- -GGCUCG---UGGA--------ACCGgu-----CGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 7029 0.67 0.50621
Target:  5'- gCCGAGCGCCccGGCgGgguuuuucguuGCGCGAGa-- -3'
miRNA:   3'- -GGCUCGUGGaaCCGgU-----------CGCGCUCgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.