Results 81 - 100 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23254 | 3' | -59.6 | NC_005259.1 | + | 7029 | 0.67 | 0.50621 |
Target: 5'- gCCGAGCGCCccGGCgGgguuuuucguuGCGCGAGa-- -3' miRNA: 3'- -GGCUCGUGGaaCCGgU-----------CGCGCUCgcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 37961 | 0.67 | 0.50621 |
Target: 5'- uUCGGGC-UCUUGGUCGGCaguGCGucguacuGCGCc -3' miRNA: 3'- -GGCUCGuGGAACCGGUCG---CGCu------CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 49855 | 0.67 | 0.516197 |
Target: 5'- cCCGAGgAUCgUUGGUCAcGaCGCGuuGCGCc -3' miRNA: 3'- -GGCUCgUGG-AACCGGU-C-GCGCu-CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 28958 | 0.67 | 0.516197 |
Target: 5'- gCCGcauCGCCgaGGUCGGUgccgaggccGCGAGCGCc -3' miRNA: 3'- -GGCuc-GUGGaaCCGGUCG---------CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 13202 | 0.67 | 0.516197 |
Target: 5'- aCCaAGCACagcggGGCCAGCgGUGGGCc- -3' miRNA: 3'- -GGcUCGUGgaa--CCGGUCG-CGCUCGcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 55874 | 0.67 | 0.5172 |
Target: 5'- gCCGAGCGCCUcgccccgaccucgggGGUC-GCGCcgGGGuCGCu -3' miRNA: 3'- -GGCUCGUGGAa--------------CCGGuCGCG--CUC-GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 62615 | 0.66 | 0.526263 |
Target: 5'- gCUGAcgccGCACCgUGGCCAGCaccGCauuGCGUa -3' miRNA: 3'- -GGCU----CGUGGaACCGGUCG---CGcu-CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 55614 | 0.66 | 0.526263 |
Target: 5'- cUCGcGCGCCUUGGCCGG-GaucaGGGCc- -3' miRNA: 3'- -GGCuCGUGGAACCGGUCgCg---CUCGcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 8407 | 0.66 | 0.526263 |
Target: 5'- gCCGGGcCACCUcgcUGGCgAGCauGCGA-UGCu -3' miRNA: 3'- -GGCUC-GUGGA---ACCGgUCG--CGCUcGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 5704 | 0.66 | 0.526263 |
Target: 5'- cUCGuGcCGCCaaGGCCAGCGCcggacGGCGg -3' miRNA: 3'- -GGCuC-GUGGaaCCGGUCGCGc----UCGCg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 64800 | 0.66 | 0.536401 |
Target: 5'- gCUGuGUGCCUcGGCCucGGCGgcaaUGAGCGUg -3' miRNA: 3'- -GGCuCGUGGAaCCGG--UCGC----GCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 45478 | 0.66 | 0.540476 |
Target: 5'- gCCGAGCuucuggccgcuggugGCCUUGGUCGcuguggccaccGCGCcGGUGUu -3' miRNA: 3'- -GGCUCG---------------UGGAACCGGU-----------CGCGcUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 63645 | 0.66 | 0.540476 |
Target: 5'- gCGAGCugCUcgcUGGCCGGgaCGcCGgacaccucgggcaccGGCGCg -3' miRNA: 3'- gGCUCGugGA---ACCGGUC--GC-GC---------------UCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 64618 | 0.66 | 0.546607 |
Target: 5'- gCGAGCGCgacgGGCagCAGCGCccaccaaucGAGCGUc -3' miRNA: 3'- gGCUCGUGgaa-CCG--GUCGCG---------CUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 61925 | 0.66 | 0.546607 |
Target: 5'- gUCG-GCAgCUcGGUCucucGCGCGGGUGCc -3' miRNA: 3'- -GGCuCGUgGAaCCGGu---CGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 43818 | 0.66 | 0.546607 |
Target: 5'- gCCGGGCguaccGCCggacacagGGCCGccgcucgccauGC-CGAGCGCa -3' miRNA: 3'- -GGCUCG-----UGGaa------CCGGU-----------CGcGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 31614 | 0.66 | 0.556873 |
Target: 5'- uUCGGGUcUUUUGucGCCAGCGCGuuguacuGCGCc -3' miRNA: 3'- -GGCUCGuGGAAC--CGGUCGCGCu------CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 36281 | 0.66 | 0.556873 |
Target: 5'- uUGAGCAgcgcgauuuUCUUG---AGCGCGAGCGCu -3' miRNA: 3'- gGCUCGU---------GGAACcggUCGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 45838 | 0.66 | 0.556873 |
Target: 5'- gCCGuccGCACCaccggGGCCGGUGgGAccGgGCa -3' miRNA: 3'- -GGCu--CGUGGaa---CCGGUCGCgCU--CgCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 7236 | 0.66 | 0.556873 |
Target: 5'- aCGAcgGCAgCCgc-GCCGGUGuCGAGUGCg -3' miRNA: 3'- gGCU--CGU-GGaacCGGUCGC-GCUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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