miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 15570 0.69 0.402792
Target:  5'- gUGGcCACCcucggGGCCAGCGCGAcGgGCc -3'
miRNA:   3'- gGCUcGUGGaa---CCGGUCGCGCU-CgCG- -5'
23254 3' -59.6 NC_005259.1 + 1319 0.69 0.401914
Target:  5'- gUGAGCGCCaUGGUCgauuucgAGauCGAGCGCa -3'
miRNA:   3'- gGCUCGUGGaACCGG-------UCgcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 59381 0.69 0.394065
Target:  5'- aCGccGCACCgu-GCCuccgcGCGCGAGCGUg -3'
miRNA:   3'- gGCu-CGUGGaacCGGu----CGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 67976 0.69 0.385462
Target:  5'- gCGcAGCGgCgUGGCCAccGcCGCGAGCGUc -3'
miRNA:   3'- gGC-UCGUgGaACCGGU--C-GCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 46557 0.69 0.385462
Target:  5'- gCCGAccGCGCCUaUGGUCgcGGCGuCGAccGCGCc -3'
miRNA:   3'- -GGCU--CGUGGA-ACCGG--UCGC-GCU--CGCG- -5'
23254 3' -59.6 NC_005259.1 + 40648 0.69 0.376984
Target:  5'- gCCGAGaaagucaugcuCGCCga-G-CAGCGCGAGCGCc -3'
miRNA:   3'- -GGCUC-----------GUGGaacCgGUCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 50126 0.69 0.376984
Target:  5'- aCGGGCACCgccacacgcgaUUGGUUGGCGauccGGCGCg -3'
miRNA:   3'- gGCUCGUGG-----------AACCGGUCGCgc--UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 52389 0.69 0.368633
Target:  5'- gCGcAGCcuGCCUcgGGCCaucgaGGUGUGGGCGCu -3'
miRNA:   3'- gGC-UCG--UGGAa-CCGG-----UCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 58562 0.69 0.368633
Target:  5'- cUCGGGCGgUUgGGCCGGauCGCG-GCGCg -3'
miRNA:   3'- -GGCUCGUgGAaCCGGUC--GCGCuCGCG- -5'
23254 3' -59.6 NC_005259.1 + 57311 0.69 0.368633
Target:  5'- aUCGAGCACCggcgGuGUCGGUGUGGucauguGCGCu -3'
miRNA:   3'- -GGCUCGUGGaa--C-CGGUCGCGCU------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 44969 0.69 0.368633
Target:  5'- aUCGGGaUGCCgagGGCCGGUGCGAcUGCc -3'
miRNA:   3'- -GGCUC-GUGGaa-CCGGUCGCGCUcGCG- -5'
23254 3' -59.6 NC_005259.1 + 31167 0.69 0.360409
Target:  5'- aUCGAGCucgcCCUUGaGCCAGUcgGCGAGgaUGCc -3'
miRNA:   3'- -GGCUCGu---GGAAC-CGGUCG--CGCUC--GCG- -5'
23254 3' -59.6 NC_005259.1 + 30554 0.69 0.360409
Target:  5'- aCCGAGCGguuguugacgcCCUUGGCC-GCaGU-AGCGCu -3'
miRNA:   3'- -GGCUCGU-----------GGAACCGGuCG-CGcUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 46056 0.7 0.355536
Target:  5'- gCCGAugGCCUUGagcugcucaagcaccGCCGGgGCGAGCGg -3'
miRNA:   3'- -GGCUcgUGGAAC---------------CGGUCgCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 12011 0.7 0.352314
Target:  5'- -aGAGUcggugGCCUUGuaCGGUGCGGGCGg -3'
miRNA:   3'- ggCUCG-----UGGAACcgGUCGCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 21893 0.7 0.334188
Target:  5'- aCC-AGCGCCUcGGgaauugcgcccguaCCAGCGCGAG-GCa -3'
miRNA:   3'- -GGcUCGUGGAaCC--------------GGUCGCGCUCgCG- -5'
23254 3' -59.6 NC_005259.1 + 33106 0.7 0.328809
Target:  5'- gCGAGCguGCCUguagGGCCA-CGCGGcagccgccGCGCg -3'
miRNA:   3'- gGCUCG--UGGAa---CCGGUcGCGCU--------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 848 0.7 0.328809
Target:  5'- gUCGcuGCGCa--GGCCgAGUGCGAGCGUg -3'
miRNA:   3'- -GGCu-CGUGgaaCCGG-UCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 46773 0.7 0.328809
Target:  5'- gCCGAcagccGCGCCcgccgGGCCgaacaccgAGCcuGCGAGCGCa -3'
miRNA:   3'- -GGCU-----CGUGGaa---CCGG--------UCG--CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 9707 0.71 0.306483
Target:  5'- aCUGGGCACCguccucgGGCCGGU-CGAGCu- -3'
miRNA:   3'- -GGCUCGUGGaa-----CCGGUCGcGCUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.