Results 101 - 110 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23254 | 3' | -59.6 | NC_005259.1 | + | 47055 | 0.74 | 0.19166 |
Target: 5'- gCGAGCGugUUGGUgAGCgagGCGAGCGCc -3' miRNA: 3'- gGCUCGUggAACCGgUCG---CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 17766 | 0.74 | 0.19166 |
Target: 5'- gCCGcGCGCCg-GGCCgAGCGCaccGAGCGUg -3' miRNA: 3'- -GGCuCGUGGaaCCGG-UCGCG---CUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 29401 | 0.76 | 0.147802 |
Target: 5'- aCCGAGgGCCUcGGCgAGCuCGuGCGCg -3' miRNA: 3'- -GGCUCgUGGAaCCGgUCGcGCuCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 67058 | 0.77 | 0.119516 |
Target: 5'- cCCGuGCGCCgaucucaagGGCCAGCGUGA-CGCc -3' miRNA: 3'- -GGCuCGUGGaa-------CCGGUCGCGCUcGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 36377 | 0.79 | 0.084078 |
Target: 5'- gUCGaAGCGgCgaggUUGGCCAGCGCGAGCGa -3' miRNA: 3'- -GGC-UCGUgG----AACCGGUCGCGCUCGCg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 8760 | 0.81 | 0.058798 |
Target: 5'- gUCGAgGC-CCUUGGCCAGCGCG-GCGg -3' miRNA: 3'- -GGCU-CGuGGAACCGGUCGCGCuCGCg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 56850 | 0.82 | 0.055627 |
Target: 5'- aCCGAGCGugUUGGUCAGUGCGAGCa- -3' miRNA: 3'- -GGCUCGUggAACCGGUCGCGCUCGcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 39798 | 0.83 | 0.042109 |
Target: 5'- gCCGAGCucaaGCCgaaagaaaUUGGCCAGCGCauuGAGCGCg -3' miRNA: 3'- -GGCUCG----UGG--------AACCGGUCGCG---CUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 44279 | 0.95 | 0.005494 |
Target: 5'- gCCGAaCGCCUUGGCCAGCGCGAGCGg -3' miRNA: 3'- -GGCUcGUGGAACCGGUCGCGCUCGCg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 36226 | 1.12 | 0.000346 |
Target: 5'- gCCGAGCACCUUGGCCAGCGCGAGCGCc -3' miRNA: 3'- -GGCUCGUGGAACCGGUCGCGCUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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