miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 10775 0.73 0.21762
Target:  5'- gCGGGuCAUCgaGGUgGGcCGCGAGCGCa -3'
miRNA:   3'- gGCUC-GUGGaaCCGgUC-GCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 12011 0.7 0.352314
Target:  5'- -aGAGUcggugGCCUUGuaCGGUGCGGGCGg -3'
miRNA:   3'- ggCUCG-----UGGAACcgGUCGCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 13202 0.67 0.516197
Target:  5'- aCCaAGCACagcggGGCCAGCgGUGGGCc- -3'
miRNA:   3'- -GGcUCGUGgaa--CCGGUCG-CGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 13421 0.66 0.567195
Target:  5'- gCCGGGgucgcCGCCggGGCCgcgcuaGGCGUGAccgucgGCGCg -3'
miRNA:   3'- -GGCUC-----GUGGaaCCGG------UCGCGCU------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 14142 0.68 0.448202
Target:  5'- aCGAGUGCCUguGCgAGCGCGucGUGUg -3'
miRNA:   3'- gGCUCGUGGAacCGgUCGCGCu-CGCG- -5'
23254 3' -59.6 NC_005259.1 + 15379 0.67 0.476769
Target:  5'- gCGAGCuGCCgcaaccgUGGCC-GCGCacucccaaGGGUGCg -3'
miRNA:   3'- gGCUCG-UGGa------ACCGGuCGCG--------CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 15570 0.69 0.402792
Target:  5'- gUGGcCACCcucggGGCCAGCGCGAcGgGCc -3'
miRNA:   3'- gGCUcGUGGaa---CCGGUCGCGCU-CgCG- -5'
23254 3' -59.6 NC_005259.1 + 16498 0.67 0.476769
Target:  5'- cCCGcGCGCa-UGGCCGagagcgaggcGCuGCGAGCGUc -3'
miRNA:   3'- -GGCuCGUGgaACCGGU----------CG-CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 17766 0.74 0.19166
Target:  5'- gCCGcGCGCCg-GGCCgAGCGCaccGAGCGUg -3'
miRNA:   3'- -GGCuCGUGGaaCCGG-UCGCG---CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 17847 0.69 0.402792
Target:  5'- gCCGAGgcCACCccgUGGUCAGCGauccuuGAGcCGCu -3'
miRNA:   3'- -GGCUC--GUGGa--ACCGGUCGCg-----CUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 18321 0.69 0.402792
Target:  5'- gCGA-CACCgaGGCCGGUGCGuuCGUg -3'
miRNA:   3'- gGCUcGUGGaaCCGGUCGCGCucGCG- -5'
23254 3' -59.6 NC_005259.1 + 21230 0.68 0.448202
Target:  5'- gCCGAGUacGCCUcGGCagcGCGCGGGUu- -3'
miRNA:   3'- -GGCUCG--UGGAaCCGgu-CGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 21893 0.7 0.334188
Target:  5'- aCC-AGCGCCUcGGgaauugcgcccguaCCAGCGCGAG-GCa -3'
miRNA:   3'- -GGcUCGUGGAaCC--------------GGUCGCGCUCgCG- -5'
23254 3' -59.6 NC_005259.1 + 23284 0.68 0.454783
Target:  5'- aCCGGGCGCggUGGuuggguaucgggguCCGGCGCGgucGGUGUc -3'
miRNA:   3'- -GGCUCGUGgaACC--------------GGUCGCGC---UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 25836 0.67 0.486491
Target:  5'- aCCGGGCcauACCUcgcggaugUGGUacucgauGUGCGGGCGUg -3'
miRNA:   3'- -GGCUCG---UGGA--------ACCGgu-----CGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 25916 0.72 0.265358
Target:  5'- cCUGAGcCGCCgccGCCGGUccgGUGAGCGCa -3'
miRNA:   3'- -GGCUC-GUGGaacCGGUCG---CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 26502 0.68 0.438891
Target:  5'- gCGAGCucGCCgc--CCGGCGagaaGAGCGCg -3'
miRNA:   3'- gGCUCG--UGGaaccGGUCGCg---CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 27041 0.67 0.486491
Target:  5'- uUGAGCuugGCCUUGGCCugAGCGaCGgucacGGCGa -3'
miRNA:   3'- gGCUCG---UGGAACCGG--UCGC-GC-----UCGCg -5'
23254 3' -59.6 NC_005259.1 + 28958 0.67 0.516197
Target:  5'- gCCGcauCGCCgaGGUCGGUgccgaggccGCGAGCGCc -3'
miRNA:   3'- -GGCuc-GUGGaaCCGGUCG---------CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 29401 0.76 0.147802
Target:  5'- aCCGAGgGCCUcGGCgAGCuCGuGCGCg -3'
miRNA:   3'- -GGCUCgUGGAaCCGgUCGcGCuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.