miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 37743 0.73 0.225409
Target:  5'- aCGAGCugCUcgaugaccagcgcggUGGCCccugcgGGCaCGAGCGCa -3'
miRNA:   3'- gGCUCGugGA---------------ACCGG------UCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 37961 0.67 0.50621
Target:  5'- uUCGGGC-UCUUGGUCGGCaguGCGucguacuGCGCc -3'
miRNA:   3'- -GGCUCGuGGAACCGGUCG---CGCu------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 39798 0.83 0.042109
Target:  5'- gCCGAGCucaaGCCgaaagaaaUUGGCCAGCGCauuGAGCGCg -3'
miRNA:   3'- -GGCUCG----UGG--------AACCGGUCGCG---CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 40648 0.69 0.376984
Target:  5'- gCCGAGaaagucaugcuCGCCga-G-CAGCGCGAGCGCc -3'
miRNA:   3'- -GGCUC-----------GUGGaacCgGUCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 42539 0.72 0.246528
Target:  5'- aUGGGCACCgaggUGGCgGGCagcucgGCGAGCaGCc -3'
miRNA:   3'- gGCUCGUGGa---ACCGgUCG------CGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 43818 0.66 0.546607
Target:  5'- gCCGGGCguaccGCCggacacagGGCCGccgcucgccauGC-CGAGCGCa -3'
miRNA:   3'- -GGCUCG-----UGGaa------CCGGU-----------CGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 44024 0.68 0.461417
Target:  5'- uUCGAGCgcggacugaacaccgGCCUUGacgaCCGGCuCGAGUGCg -3'
miRNA:   3'- -GGCUCG---------------UGGAACc---GGUCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 44279 0.95 0.005494
Target:  5'- gCCGAaCGCCUUGGCCAGCGCGAGCGg -3'
miRNA:   3'- -GGCUcGUGGAACCGGUCGCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 44969 0.69 0.368633
Target:  5'- aUCGGGaUGCCgagGGCCGGUGCGAcUGCc -3'
miRNA:   3'- -GGCUC-GUGGaa-CCGGUCGCGCUcGCG- -5'
23254 3' -59.6 NC_005259.1 + 45165 0.68 0.429692
Target:  5'- ---cGC-CCUUGGCCuuguuGCGCGccgaggucAGCGCg -3'
miRNA:   3'- ggcuCGuGGAACCGGu----CGCGC--------UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 45478 0.66 0.540476
Target:  5'- gCCGAGCuucuggccgcuggugGCCUUGGUCGcuguggccaccGCGCcGGUGUu -3'
miRNA:   3'- -GGCUCG---------------UGGAACCGGU-----------CGCGcUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 45838 0.66 0.556873
Target:  5'- gCCGuccGCACCaccggGGCCGGUGgGAccGgGCa -3'
miRNA:   3'- -GGCu--CGUGGaa---CCGGUCGCgCU--CgCG- -5'
23254 3' -59.6 NC_005259.1 + 46056 0.7 0.355536
Target:  5'- gCCGAugGCCUUGagcugcucaagcaccGCCGGgGCGAGCGg -3'
miRNA:   3'- -GGCUcgUGGAAC---------------CGGUCgCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 46557 0.69 0.385462
Target:  5'- gCCGAccGCGCCUaUGGUCgcGGCGuCGAccGCGCc -3'
miRNA:   3'- -GGCU--CGUGGA-ACCGG--UCGC-GCU--CGCG- -5'
23254 3' -59.6 NC_005259.1 + 46773 0.7 0.328809
Target:  5'- gCCGAcagccGCGCCcgccgGGCCgaacaccgAGCcuGCGAGCGCa -3'
miRNA:   3'- -GGCU-----CGUGGaa---CCGG--------UCG--CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 47055 0.74 0.19166
Target:  5'- gCGAGCGugUUGGUgAGCgagGCGAGCGCc -3'
miRNA:   3'- gGCUCGUggAACCGgUCG---CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 47324 0.66 0.567195
Target:  5'- aCCG-GCgGCCUUGGUCAGCcccGUGAuCGUu -3'
miRNA:   3'- -GGCuCG-UGGAACCGGUCG---CGCUcGCG- -5'
23254 3' -59.6 NC_005259.1 + 47858 0.68 0.420608
Target:  5'- uUCGAGCGCCUuguUGGCCucuuccagcuuGGC-CGGGUcaGCg -3'
miRNA:   3'- -GGCUCGUGGA---ACCGG-----------UCGcGCUCG--CG- -5'
23254 3' -59.6 NC_005259.1 + 47989 0.66 0.577564
Target:  5'- gCCGGGCAgCgcaagaccGGCUuGUGUGAGCuGCu -3'
miRNA:   3'- -GGCUCGUgGaa------CCGGuCGCGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 49398 0.72 0.258955
Target:  5'- gCCGAGCGagacguaCUUGcucgauGCCAGCgagaaaccgGCGAGCGCc -3'
miRNA:   3'- -GGCUCGUg------GAAC------CGGUCG---------CGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.