miRNA display CGI


Results 81 - 100 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 49557 0.73 0.22882
Target:  5'- gCCGGGCugUUcgucggucgUGGCCAGaccgGCGGGCGg -3'
miRNA:   3'- -GGCUCGugGA---------ACCGGUCg---CGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 49855 0.67 0.516197
Target:  5'- cCCGAGgAUCgUUGGUCAcGaCGCGuuGCGCc -3'
miRNA:   3'- -GGCUCgUGG-AACCGGU-C-GCGCu-CGCG- -5'
23254 3' -59.6 NC_005259.1 + 50126 0.69 0.376984
Target:  5'- aCGGGCACCgccacacgcgaUUGGUUGGCGauccGGCGCg -3'
miRNA:   3'- gGCUCGUGG-----------AACCGGUCGCgc--UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 50205 0.67 0.476769
Target:  5'- cCCGcucaAGCGCCgccucGUCaaucucgauccgAGCGCGGGCGCg -3'
miRNA:   3'- -GGC----UCGUGGaac--CGG------------UCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 50406 0.71 0.292255
Target:  5'- gCCGAGCgcgccgguGCCUUGaCCGGCuCGGGCaGCg -3'
miRNA:   3'- -GGCUCG--------UGGAACcGGUCGcGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 51775 0.68 0.429692
Target:  5'- gCGAGCGCCUUgaGGUauuCGGCGCucGGCGg -3'
miRNA:   3'- gGCUCGUGGAA--CCG---GUCGCGc-UCGCg -5'
23254 3' -59.6 NC_005259.1 + 52141 0.68 0.45762
Target:  5'- uCCG-GCACCUcgccgaGGCaggCAGCGCcGAGgCGCu -3'
miRNA:   3'- -GGCuCGUGGAa-----CCG---GUCGCG-CUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 52389 0.69 0.368633
Target:  5'- gCGcAGCcuGCCUcgGGCCaucgaGGUGUGGGCGCu -3'
miRNA:   3'- gGC-UCG--UGGAa-CCGG-----UCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 52597 0.71 0.277206
Target:  5'- gCCGAGCACCagcgccguacggUGGCCAacuaCGuCGAGCuGCg -3'
miRNA:   3'- -GGCUCGUGGa-----------ACCGGUc---GC-GCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 54226 0.69 0.402792
Target:  5'- aCCGGGCAUag-GGUCGGUccuccuaaGuCGGGCGCg -3'
miRNA:   3'- -GGCUCGUGgaaCCGGUCG--------C-GCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 55614 0.66 0.526263
Target:  5'- cUCGcGCGCCUUGGCCGG-GaucaGGGCc- -3'
miRNA:   3'- -GGCuCGUGGAACCGGUCgCg---CUCGcg -5'
23254 3' -59.6 NC_005259.1 + 55874 0.67 0.5172
Target:  5'- gCCGAGCGCCUcgccccgaccucgggGGUC-GCGCcgGGGuCGCu -3'
miRNA:   3'- -GGCUCGUGGAa--------------CCGGuCGCG--CUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 56850 0.82 0.055627
Target:  5'- aCCGAGCGugUUGGUCAGUGCGAGCa- -3'
miRNA:   3'- -GGCUCGUggAACCGGUCGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 57009 0.73 0.206892
Target:  5'- gCGAGCACCUcagcgcGGCuCGGCGCGguggGGuCGCa -3'
miRNA:   3'- gGCUCGUGGAa-----CCG-GUCGCGC----UC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 57311 0.69 0.368633
Target:  5'- aUCGAGCACCggcgGuGUCGGUGUGGucauguGCGCu -3'
miRNA:   3'- -GGCUCGUGGaa--C-CGGUCGCGCU------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 58562 0.69 0.368633
Target:  5'- cUCGGGCGgUUgGGCCGGauCGCG-GCGCg -3'
miRNA:   3'- -GGCUCGUgGAaCCGGUC--GCGCuCGCG- -5'
23254 3' -59.6 NC_005259.1 + 58936 0.73 0.209001
Target:  5'- gCGGGCgcgguggcagcgucgGCCUUGGCCAGCagguCGGGCaGCu -3'
miRNA:   3'- gGCUCG---------------UGGAACCGGUCGc---GCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 59381 0.69 0.394065
Target:  5'- aCGccGCACCgu-GCCuccgcGCGCGAGCGUg -3'
miRNA:   3'- gGCu-CGUGGaacCGGu----CGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 60516 0.67 0.50621
Target:  5'- gUCGuaguGCGCCaUGGCCGgGC-CGGGaCGCa -3'
miRNA:   3'- -GGCu---CGUGGaACCGGU-CGcGCUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 61851 0.71 0.27123
Target:  5'- gUGAGCACCUcGGCCAccgccucGCGUGccGCGUg -3'
miRNA:   3'- gGCUCGUGGAaCCGGU-------CGCGCu-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.