miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 54226 0.69 0.402792
Target:  5'- aCCGGGCAUag-GGUCGGUccuccuaaGuCGGGCGCg -3'
miRNA:   3'- -GGCUCGUGgaaCCGGUCG--------C-GCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 52597 0.71 0.277206
Target:  5'- gCCGAGCACCagcgccguacggUGGCCAacuaCGuCGAGCuGCg -3'
miRNA:   3'- -GGCUCGUGGa-----------ACCGGUc---GC-GCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 52389 0.69 0.368633
Target:  5'- gCGcAGCcuGCCUcgGGCCaucgaGGUGUGGGCGCu -3'
miRNA:   3'- gGC-UCG--UGGAa-CCGG-----UCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 52141 0.68 0.45762
Target:  5'- uCCG-GCACCUcgccgaGGCaggCAGCGCcGAGgCGCu -3'
miRNA:   3'- -GGCuCGUGGAa-----CCG---GUCGCG-CUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 51775 0.68 0.429692
Target:  5'- gCGAGCGCCUUgaGGUauuCGGCGCucGGCGg -3'
miRNA:   3'- gGCUCGUGGAA--CCG---GUCGCGc-UCGCg -5'
23254 3' -59.6 NC_005259.1 + 50406 0.71 0.292255
Target:  5'- gCCGAGCgcgccgguGCCUUGaCCGGCuCGGGCaGCg -3'
miRNA:   3'- -GGCUCG--------UGGAACcGGUCGcGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 50205 0.67 0.476769
Target:  5'- cCCGcucaAGCGCCgccucGUCaaucucgauccgAGCGCGGGCGCg -3'
miRNA:   3'- -GGC----UCGUGGaac--CGG------------UCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 50126 0.69 0.376984
Target:  5'- aCGGGCACCgccacacgcgaUUGGUUGGCGauccGGCGCg -3'
miRNA:   3'- gGCUCGUGG-----------AACCGGUCGCgc--UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 49855 0.67 0.516197
Target:  5'- cCCGAGgAUCgUUGGUCAcGaCGCGuuGCGCc -3'
miRNA:   3'- -GGCUCgUGG-AACCGGU-C-GCGCu-CGCG- -5'
23254 3' -59.6 NC_005259.1 + 49557 0.73 0.22882
Target:  5'- gCCGGGCugUUcgucggucgUGGCCAGaccgGCGGGCGg -3'
miRNA:   3'- -GGCUCGugGA---------ACCGGUCg---CGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 49398 0.72 0.258955
Target:  5'- gCCGAGCGagacguaCUUGcucgauGCCAGCgagaaaccgGCGAGCGCc -3'
miRNA:   3'- -GGCUCGUg------GAAC------CGGUCG---------CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 47989 0.66 0.577564
Target:  5'- gCCGGGCAgCgcaagaccGGCUuGUGUGAGCuGCu -3'
miRNA:   3'- -GGCUCGUgGaa------CCGGuCGCGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 47858 0.68 0.420608
Target:  5'- uUCGAGCGCCUuguUGGCCucuuccagcuuGGC-CGGGUcaGCg -3'
miRNA:   3'- -GGCUCGUGGA---ACCGG-----------UCGcGCUCG--CG- -5'
23254 3' -59.6 NC_005259.1 + 47324 0.66 0.567195
Target:  5'- aCCG-GCgGCCUUGGUCAGCcccGUGAuCGUu -3'
miRNA:   3'- -GGCuCG-UGGAACCGGUCG---CGCUcGCG- -5'
23254 3' -59.6 NC_005259.1 + 47055 0.74 0.19166
Target:  5'- gCGAGCGugUUGGUgAGCgagGCGAGCGCc -3'
miRNA:   3'- gGCUCGUggAACCGgUCG---CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 46773 0.7 0.328809
Target:  5'- gCCGAcagccGCGCCcgccgGGCCgaacaccgAGCcuGCGAGCGCa -3'
miRNA:   3'- -GGCU-----CGUGGaa---CCGG--------UCG--CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 46557 0.69 0.385462
Target:  5'- gCCGAccGCGCCUaUGGUCgcGGCGuCGAccGCGCc -3'
miRNA:   3'- -GGCU--CGUGGA-ACCGG--UCGC-GCU--CGCG- -5'
23254 3' -59.6 NC_005259.1 + 46056 0.7 0.355536
Target:  5'- gCCGAugGCCUUGagcugcucaagcaccGCCGGgGCGAGCGg -3'
miRNA:   3'- -GGCUcgUGGAAC---------------CGGUCgCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 45838 0.66 0.556873
Target:  5'- gCCGuccGCACCaccggGGCCGGUGgGAccGgGCa -3'
miRNA:   3'- -GGCu--CGUGGaa---CCGGUCGCgCU--CgCG- -5'
23254 3' -59.6 NC_005259.1 + 45478 0.66 0.540476
Target:  5'- gCCGAGCuucuggccgcuggugGCCUUGGUCGcuguggccaccGCGCcGGUGUu -3'
miRNA:   3'- -GGCUCG---------------UGGAACCGGU-----------CGCGcUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.