miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 45165 0.68 0.429692
Target:  5'- ---cGC-CCUUGGCCuuguuGCGCGccgaggucAGCGCg -3'
miRNA:   3'- ggcuCGuGGAACCGGu----CGCGC--------UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 44969 0.69 0.368633
Target:  5'- aUCGGGaUGCCgagGGCCGGUGCGAcUGCc -3'
miRNA:   3'- -GGCUC-GUGGaa-CCGGUCGCGCUcGCG- -5'
23254 3' -59.6 NC_005259.1 + 44279 0.95 0.005494
Target:  5'- gCCGAaCGCCUUGGCCAGCGCGAGCGg -3'
miRNA:   3'- -GGCUcGUGGAACCGGUCGCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 44024 0.68 0.461417
Target:  5'- uUCGAGCgcggacugaacaccgGCCUUGacgaCCGGCuCGAGUGCg -3'
miRNA:   3'- -GGCUCG---------------UGGAACc---GGUCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 43818 0.66 0.546607
Target:  5'- gCCGGGCguaccGCCggacacagGGCCGccgcucgccauGC-CGAGCGCa -3'
miRNA:   3'- -GGCUCG-----UGGaa------CCGGU-----------CGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 42539 0.72 0.246528
Target:  5'- aUGGGCACCgaggUGGCgGGCagcucgGCGAGCaGCc -3'
miRNA:   3'- gGCUCGUGGa---ACCGgUCG------CGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 40648 0.69 0.376984
Target:  5'- gCCGAGaaagucaugcuCGCCga-G-CAGCGCGAGCGCc -3'
miRNA:   3'- -GGCUC-----------GUGGaacCgGUCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 39798 0.83 0.042109
Target:  5'- gCCGAGCucaaGCCgaaagaaaUUGGCCAGCGCauuGAGCGCg -3'
miRNA:   3'- -GGCUCG----UGG--------AACCGGUCGCG---CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 37961 0.67 0.50621
Target:  5'- uUCGGGC-UCUUGGUCGGCaguGCGucguacuGCGCc -3'
miRNA:   3'- -GGCUCGuGGAACCGGUCG---CGCu------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 37743 0.73 0.225409
Target:  5'- aCGAGCugCUcgaugaccagcgcggUGGCCccugcgGGCaCGAGCGCa -3'
miRNA:   3'- gGCUCGugGA---------------ACCGG------UCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 36410 0.71 0.299304
Target:  5'- uUGAGCGCCUcaagggucaUGGUCuGCGC-AGCGUc -3'
miRNA:   3'- gGCUCGUGGA---------ACCGGuCGCGcUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 36377 0.79 0.084078
Target:  5'- gUCGaAGCGgCgaggUUGGCCAGCGCGAGCGa -3'
miRNA:   3'- -GGC-UCGUgG----AACCGGUCGCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 36281 0.66 0.556873
Target:  5'- uUGAGCAgcgcgauuuUCUUG---AGCGCGAGCGCu -3'
miRNA:   3'- gGCUCGU---------GGAACcggUCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 36226 1.12 0.000346
Target:  5'- gCCGAGCACCUUGGCCAGCGCGAGCGCc -3'
miRNA:   3'- -GGCUCGUGGAACCGGUCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 36004 0.68 0.451956
Target:  5'- gCCGGacuGCACCgaggUGGCCAGCGaggucgacaUGAucagcgaggccacccGCGCg -3'
miRNA:   3'- -GGCU---CGUGGa---ACCGGUCGC---------GCU---------------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 35651 0.72 0.246528
Target:  5'- gCCGcuGGCGagggUGGCCAGCGCGgugguGGUGCa -3'
miRNA:   3'- -GGC--UCGUgga-ACCGGUCGCGC-----UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 34705 0.71 0.271889
Target:  5'- gCCGAcCAUCU--GCC-GCGCGAGCGCc -3'
miRNA:   3'- -GGCUcGUGGAacCGGuCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 34407 0.71 0.299304
Target:  5'- aCCGGGCugUcaUUGGuCCA-CGCGAGaCGCc -3'
miRNA:   3'- -GGCUCGugG--AACC-GGUcGCGCUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 33913 0.68 0.45762
Target:  5'- gCCGAG-ACC--GGCCacGGUGCGAGCa- -3'
miRNA:   3'- -GGCUCgUGGaaCCGG--UCGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 33106 0.7 0.328809
Target:  5'- gCGAGCguGCCUguagGGCCA-CGCGGcagccgccGCGCg -3'
miRNA:   3'- gGCUCG--UGGAa---CCGGUcGCGCU--------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.