Results 61 - 80 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23254 | 3' | -59.6 | NC_005259.1 | + | 32908 | 0.69 | 0.402792 |
Target: 5'- gUGAGcCACCc-GGCCcGCuCGGGCGCg -3' miRNA: 3'- gGCUC-GUGGaaCCGGuCGcGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 32529 | 0.68 | 0.429692 |
Target: 5'- gCGGGCggcaggcuugACCUugcuguUGGCC-GCcccgGCGAGCGCg -3' miRNA: 3'- gGCUCG----------UGGA------ACCGGuCG----CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 32448 | 0.68 | 0.43612 |
Target: 5'- -aGGGUccaucAUCUUGGCCAGCagaguuucguacucGcCGGGCGCg -3' miRNA: 3'- ggCUCG-----UGGAACCGGUCG--------------C-GCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 31892 | 0.72 | 0.265358 |
Target: 5'- gCCG-GUcUCaaGGcCCGGCGCGAGCGCc -3' miRNA: 3'- -GGCuCGuGGaaCC-GGUCGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 31614 | 0.66 | 0.556873 |
Target: 5'- uUCGGGUcUUUUGucGCCAGCGCGuuguacuGCGCc -3' miRNA: 3'- -GGCUCGuGGAAC--CGGUCGCGCu------CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 31167 | 0.69 | 0.360409 |
Target: 5'- aUCGAGCucgcCCUUGaGCCAGUcgGCGAGgaUGCc -3' miRNA: 3'- -GGCUCGu---GGAAC-CGGUCG--CGCUC--GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 30940 | 0.67 | 0.476769 |
Target: 5'- aUGAGCAUCUUGGCgAuGuCGcCGAGCa- -3' miRNA: 3'- gGCUCGUGGAACCGgU-C-GC-GCUCGcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 30678 | 0.66 | 0.567195 |
Target: 5'- gCGAGUAgC-UGGCCaccugaggcAGCaCGAGCGUg -3' miRNA: 3'- gGCUCGUgGaACCGG---------UCGcGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 30554 | 0.69 | 0.360409 |
Target: 5'- aCCGAGCGguuguugacgcCCUUGGCC-GCaGU-AGCGCu -3' miRNA: 3'- -GGCUCGU-----------GGAACCGGuCG-CGcUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 30290 | 0.67 | 0.476769 |
Target: 5'- gUCGAGCuCUacggUGGCCcauuAGacgGCGAGCGCc -3' miRNA: 3'- -GGCUCGuGGa---ACCGG----UCg--CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 29401 | 0.76 | 0.147802 |
Target: 5'- aCCGAGgGCCUcGGCgAGCuCGuGCGCg -3' miRNA: 3'- -GGCUCgUGGAaCCGgUCGcGCuCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 28958 | 0.67 | 0.516197 |
Target: 5'- gCCGcauCGCCgaGGUCGGUgccgaggccGCGAGCGCc -3' miRNA: 3'- -GGCuc-GUGGaaCCGGUCG---------CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 27041 | 0.67 | 0.486491 |
Target: 5'- uUGAGCuugGCCUUGGCCugAGCGaCGgucacGGCGa -3' miRNA: 3'- gGCUCG---UGGAACCGG--UCGC-GC-----UCGCg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 26502 | 0.68 | 0.438891 |
Target: 5'- gCGAGCucGCCgc--CCGGCGagaaGAGCGCg -3' miRNA: 3'- gGCUCG--UGGaaccGGUCGCg---CUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 25916 | 0.72 | 0.265358 |
Target: 5'- cCUGAGcCGCCgccGCCGGUccgGUGAGCGCa -3' miRNA: 3'- -GGCUC-GUGGaacCGGUCG---CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 25836 | 0.67 | 0.486491 |
Target: 5'- aCCGGGCcauACCUcgcggaugUGGUacucgauGUGCGGGCGUg -3' miRNA: 3'- -GGCUCG---UGGA--------ACCGgu-----CGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 23284 | 0.68 | 0.454783 |
Target: 5'- aCCGGGCGCggUGGuuggguaucgggguCCGGCGCGgucGGUGUc -3' miRNA: 3'- -GGCUCGUGgaACC--------------GGUCGCGC---UCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 21893 | 0.7 | 0.334188 |
Target: 5'- aCC-AGCGCCUcGGgaauugcgcccguaCCAGCGCGAG-GCa -3' miRNA: 3'- -GGcUCGUGGAaCC--------------GGUCGCGCUCgCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 21230 | 0.68 | 0.448202 |
Target: 5'- gCCGAGUacGCCUcGGCagcGCGCGGGUu- -3' miRNA: 3'- -GGCUCG--UGGAaCCGgu-CGCGCUCGcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 18321 | 0.69 | 0.402792 |
Target: 5'- gCGA-CACCgaGGCCGGUGCGuuCGUg -3' miRNA: 3'- gGCUcGUGGaaCCGGUCGCGCucGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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