miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 36377 0.79 0.084078
Target:  5'- gUCGaAGCGgCgaggUUGGCCAGCGCGAGCGa -3'
miRNA:   3'- -GGC-UCGUgG----AACCGGUCGCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 8760 0.81 0.058798
Target:  5'- gUCGAgGC-CCUUGGCCAGCGCG-GCGg -3'
miRNA:   3'- -GGCU-CGuGGAACCGGUCGCGCuCGCg -5'
23254 3' -59.6 NC_005259.1 + 56850 0.82 0.055627
Target:  5'- aCCGAGCGugUUGGUCAGUGCGAGCa- -3'
miRNA:   3'- -GGCUCGUggAACCGGUCGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 39798 0.83 0.042109
Target:  5'- gCCGAGCucaaGCCgaaagaaaUUGGCCAGCGCauuGAGCGCg -3'
miRNA:   3'- -GGCUCG----UGG--------AACCGGUCGCG---CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 44279 0.95 0.005494
Target:  5'- gCCGAaCGCCUUGGCCAGCGCGAGCGg -3'
miRNA:   3'- -GGCUcGUGGAACCGGUCGCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 37743 0.73 0.225409
Target:  5'- aCGAGCugCUcgaugaccagcgcggUGGCCccugcgGGCaCGAGCGCa -3'
miRNA:   3'- gGCUCGugGA---------------ACCGG------UCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 49557 0.73 0.22882
Target:  5'- gCCGGGCugUUcgucggucgUGGCCAGaccgGCGGGCGg -3'
miRNA:   3'- -GGCUCGugGA---------ACCGGUCg---CGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 34407 0.71 0.299304
Target:  5'- aCCGGGCugUcaUUGGuCCA-CGCGAGaCGCc -3'
miRNA:   3'- -GGCUCGugG--AACC-GGUcGCGCUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 36410 0.71 0.299304
Target:  5'- uUGAGCGCCUcaagggucaUGGUCuGCGC-AGCGUc -3'
miRNA:   3'- gGCUCGUGGA---------ACCGGuCGCGcUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 4291 0.71 0.292255
Target:  5'- aCGAGCacggACCggcGGCCcuGCGaUGAGCGCg -3'
miRNA:   3'- gGCUCG----UGGaa-CCGGu-CGC-GCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 50406 0.71 0.292255
Target:  5'- gCCGAGCgcgccgguGCCUUGaCCGGCuCGGGCaGCg -3'
miRNA:   3'- -GGCUCG--------UGGAACcGGUCGcGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 5452 0.71 0.281248
Target:  5'- gCCGAcagaucgcaugagcaGCACCaaUGGCCGGUGCaauAGCGCc -3'
miRNA:   3'- -GGCU---------------CGUGGa-ACCGGUCGCGc--UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 52597 0.71 0.277206
Target:  5'- gCCGAGCACCagcgccguacggUGGCCAacuaCGuCGAGCuGCg -3'
miRNA:   3'- -GGCUCGUGGa-----------ACCGGUc---GC-GCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 34705 0.71 0.271889
Target:  5'- gCCGAcCAUCU--GCC-GCGCGAGCGCc -3'
miRNA:   3'- -GGCUcGUGGAacCGGuCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 61851 0.71 0.27123
Target:  5'- gUGAGCACCUcGGCCAccgccucGCGUGccGCGUg -3'
miRNA:   3'- gGCUCGUGGAaCCGGU-------CGCGCu-CGCG- -5'
23254 3' -59.6 NC_005259.1 + 31892 0.72 0.265358
Target:  5'- gCCG-GUcUCaaGGcCCGGCGCGAGCGCc -3'
miRNA:   3'- -GGCuCGuGGaaCC-GGUCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 25916 0.72 0.265358
Target:  5'- cCUGAGcCGCCgccGCCGGUccgGUGAGCGCa -3'
miRNA:   3'- -GGCUC-GUGGaacCGGUCG---CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 49398 0.72 0.258955
Target:  5'- gCCGAGCGagacguaCUUGcucgauGCCAGCgagaaaccgGCGAGCGCc -3'
miRNA:   3'- -GGCUCGUg------GAAC------CGGUCG---------CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 42539 0.72 0.246528
Target:  5'- aUGGGCACCgaggUGGCgGGCagcucgGCGAGCaGCc -3'
miRNA:   3'- gGCUCGUGGa---ACCGgUCG------CGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 35651 0.72 0.246528
Target:  5'- gCCGcuGGCGagggUGGCCAGCGCGgugguGGUGCa -3'
miRNA:   3'- -GGC--UCGUgga-ACCGGUCGCGC-----UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.