Results 81 - 100 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23254 | 3' | -59.6 | NC_005259.1 | + | 58562 | 0.69 | 0.368633 |
Target: 5'- cUCGGGCGgUUgGGCCGGauCGCG-GCGCg -3' miRNA: 3'- -GGCUCGUgGAaCCGGUC--GCGCuCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 50126 | 0.69 | 0.376984 |
Target: 5'- aCGGGCACCgccacacgcgaUUGGUUGGCGauccGGCGCg -3' miRNA: 3'- gGCUCGUGG-----------AACCGGUCGCgc--UCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 40648 | 0.69 | 0.376984 |
Target: 5'- gCCGAGaaagucaugcuCGCCga-G-CAGCGCGAGCGCc -3' miRNA: 3'- -GGCUC-----------GUGGaacCgGUCGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 46557 | 0.69 | 0.385462 |
Target: 5'- gCCGAccGCGCCUaUGGUCgcGGCGuCGAccGCGCc -3' miRNA: 3'- -GGCU--CGUGGA-ACCGG--UCGC-GCU--CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 67976 | 0.69 | 0.385462 |
Target: 5'- gCGcAGCGgCgUGGCCAccGcCGCGAGCGUc -3' miRNA: 3'- gGC-UCGUgGaACCGGU--C-GCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 59381 | 0.69 | 0.394065 |
Target: 5'- aCGccGCACCgu-GCCuccgcGCGCGAGCGUg -3' miRNA: 3'- gGCu-CGUGGaacCGGu----CGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 1319 | 0.69 | 0.401914 |
Target: 5'- gUGAGCGCCaUGGUCgauuucgAGauCGAGCGCa -3' miRNA: 3'- gGCUCGUGGaACCGG-------UCgcGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 31167 | 0.69 | 0.360409 |
Target: 5'- aUCGAGCucgcCCUUGaGCCAGUcgGCGAGgaUGCc -3' miRNA: 3'- -GGCUCGu---GGAAC-CGGUCG--CGCUC--GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 30554 | 0.69 | 0.360409 |
Target: 5'- aCCGAGCGguuguugacgcCCUUGGCC-GCaGU-AGCGCu -3' miRNA: 3'- -GGCUCGU-----------GGAACCGGuCG-CGcUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 46056 | 0.7 | 0.355536 |
Target: 5'- gCCGAugGCCUUGagcugcucaagcaccGCCGGgGCGAGCGg -3' miRNA: 3'- -GGCUcgUGGAAC---------------CGGUCgCGCUCGCg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 4291 | 0.71 | 0.292255 |
Target: 5'- aCGAGCacggACCggcGGCCcuGCGaUGAGCGCg -3' miRNA: 3'- gGCUCG----UGGaa-CCGGu-CGC-GCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 36410 | 0.71 | 0.299304 |
Target: 5'- uUGAGCGCCUcaagggucaUGGUCuGCGC-AGCGUc -3' miRNA: 3'- gGCUCGUGGA---------ACCGGuCGCGcUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 34407 | 0.71 | 0.299304 |
Target: 5'- aCCGGGCugUcaUUGGuCCA-CGCGAGaCGCc -3' miRNA: 3'- -GGCUCGugG--AACC-GGUcGCGCUC-GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 63862 | 0.71 | 0.299304 |
Target: 5'- gCGAGgugGCCggcUGGCCuuGCGUGGGCGUg -3' miRNA: 3'- gGCUCg--UGGa--ACCGGu-CGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 9707 | 0.71 | 0.306483 |
Target: 5'- aCUGGGCACCguccucgGGCCGGU-CGAGCu- -3' miRNA: 3'- -GGCUCGUGGaa-----CCGGUCGcGCUCGcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 33106 | 0.7 | 0.328809 |
Target: 5'- gCGAGCguGCCUguagGGCCA-CGCGGcagccgccGCGCg -3' miRNA: 3'- gGCUCG--UGGAa---CCGGUcGCGCU--------CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 848 | 0.7 | 0.328809 |
Target: 5'- gUCGcuGCGCa--GGCCgAGUGCGAGCGUg -3' miRNA: 3'- -GGCu-CGUGgaaCCGG-UCGCGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 46773 | 0.7 | 0.328809 |
Target: 5'- gCCGAcagccGCGCCcgccgGGCCgaacaccgAGCcuGCGAGCGCa -3' miRNA: 3'- -GGCU-----CGUGGaa---CCGG--------UCG--CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 21893 | 0.7 | 0.334188 |
Target: 5'- aCC-AGCGCCUcGGgaauugcgcccguaCCAGCGCGAG-GCa -3' miRNA: 3'- -GGcUCGUGGAaCC--------------GGUCGCGCUCgCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 12011 | 0.7 | 0.352314 |
Target: 5'- -aGAGUcggugGCCUUGuaCGGUGCGGGCGg -3' miRNA: 3'- ggCUCG-----UGGAACcgGUCGCGCUCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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