miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 36226 1.12 0.000346
Target:  5'- gCCGAGCACCUUGGCCAGCGCGAGCGCc -3'
miRNA:   3'- -GGCUCGUGGAACCGGUCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 44279 0.95 0.005494
Target:  5'- gCCGAaCGCCUUGGCCAGCGCGAGCGg -3'
miRNA:   3'- -GGCUcGUGGAACCGGUCGCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 39798 0.83 0.042109
Target:  5'- gCCGAGCucaaGCCgaaagaaaUUGGCCAGCGCauuGAGCGCg -3'
miRNA:   3'- -GGCUCG----UGG--------AACCGGUCGCG---CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 56850 0.82 0.055627
Target:  5'- aCCGAGCGugUUGGUCAGUGCGAGCa- -3'
miRNA:   3'- -GGCUCGUggAACCGGUCGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 8760 0.81 0.058798
Target:  5'- gUCGAgGC-CCUUGGCCAGCGCG-GCGg -3'
miRNA:   3'- -GGCU-CGuGGAACCGGUCGCGCuCGCg -5'
23254 3' -59.6 NC_005259.1 + 36377 0.79 0.084078
Target:  5'- gUCGaAGCGgCgaggUUGGCCAGCGCGAGCGa -3'
miRNA:   3'- -GGC-UCGUgG----AACCGGUCGCGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 67058 0.77 0.119516
Target:  5'- cCCGuGCGCCgaucucaagGGCCAGCGUGA-CGCc -3'
miRNA:   3'- -GGCuCGUGGaa-------CCGGUCGCGCUcGCG- -5'
23254 3' -59.6 NC_005259.1 + 29401 0.76 0.147802
Target:  5'- aCCGAGgGCCUcGGCgAGCuCGuGCGCg -3'
miRNA:   3'- -GGCUCgUGGAaCCGgUCGcGCuCGCG- -5'
23254 3' -59.6 NC_005259.1 + 17766 0.74 0.19166
Target:  5'- gCCGcGCGCCg-GGCCgAGCGCaccGAGCGUg -3'
miRNA:   3'- -GGCuCGUGGaaCCGG-UCGCG---CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 47055 0.74 0.19166
Target:  5'- gCGAGCGugUUGGUgAGCgagGCGAGCGCc -3'
miRNA:   3'- gGCUCGUggAACCGgUCG---CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 57009 0.73 0.206892
Target:  5'- gCGAGCACCUcagcgcGGCuCGGCGCGguggGGuCGCa -3'
miRNA:   3'- gGCUCGUGGAa-----CCG-GUCGCGC----UC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 58936 0.73 0.209001
Target:  5'- gCGGGCgcgguggcagcgucgGCCUUGGCCAGCagguCGGGCaGCu -3'
miRNA:   3'- gGCUCG---------------UGGAACCGGUCGc---GCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 10775 0.73 0.21762
Target:  5'- gCGGGuCAUCgaGGUgGGcCGCGAGCGCa -3'
miRNA:   3'- gGCUC-GUGGaaCCGgUC-GCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 10638 0.73 0.21762
Target:  5'- gCCGAaCAgCUUGGCCucGCGguCGAGCGCc -3'
miRNA:   3'- -GGCUcGUgGAACCGGu-CGC--GCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 37743 0.73 0.225409
Target:  5'- aCGAGCugCUcgaugaccagcgcggUGGCCccugcgGGCaCGAGCGCa -3'
miRNA:   3'- gGCUCGugGA---------------ACCGG------UCGcGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 49557 0.73 0.22882
Target:  5'- gCCGGGCugUUcgucggucgUGGCCAGaccgGCGGGCGg -3'
miRNA:   3'- -GGCUCGugGA---------ACCGGUCg---CGCUCGCg -5'
23254 3' -59.6 NC_005259.1 + 42539 0.72 0.246528
Target:  5'- aUGGGCACCgaggUGGCgGGCagcucgGCGAGCaGCc -3'
miRNA:   3'- gGCUCGUGGa---ACCGgUCG------CGCUCG-CG- -5'
23254 3' -59.6 NC_005259.1 + 35651 0.72 0.246528
Target:  5'- gCCGcuGGCGagggUGGCCAGCGCGgugguGGUGCa -3'
miRNA:   3'- -GGC--UCGUgga-ACCGGUCGCGC-----UCGCG- -5'
23254 3' -59.6 NC_005259.1 + 49398 0.72 0.258955
Target:  5'- gCCGAGCGagacguaCUUGcucgauGCCAGCgagaaaccgGCGAGCGCc -3'
miRNA:   3'- -GGCUCGUg------GAAC------CGGUCG---------CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 31892 0.72 0.265358
Target:  5'- gCCG-GUcUCaaGGcCCGGCGCGAGCGCc -3'
miRNA:   3'- -GGCuCGuGGaaCC-GGUCGCGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.