miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23254 3' -59.6 NC_005259.1 + 5704 0.66 0.526263
Target:  5'- cUCGuGcCGCCaaGGCCAGCGCcggacGGCGg -3'
miRNA:   3'- -GGCuC-GUGGaaCCGGUCGCGc----UCGCg -5'
23254 3' -59.6 NC_005259.1 + 62615 0.66 0.526263
Target:  5'- gCUGAcgccGCACCgUGGCCAGCaccGCauuGCGUa -3'
miRNA:   3'- -GGCU----CGUGGaACCGGUCG---CGcu-CGCG- -5'
23254 3' -59.6 NC_005259.1 + 55614 0.66 0.526263
Target:  5'- cUCGcGCGCCUUGGCCGG-GaucaGGGCc- -3'
miRNA:   3'- -GGCuCGUGGAACCGGUCgCg---CUCGcg -5'
23254 3' -59.6 NC_005259.1 + 8407 0.66 0.526263
Target:  5'- gCCGGGcCACCUcgcUGGCgAGCauGCGA-UGCu -3'
miRNA:   3'- -GGCUC-GUGGA---ACCGgUCG--CGCUcGCG- -5'
23254 3' -59.6 NC_005259.1 + 55874 0.67 0.5172
Target:  5'- gCCGAGCGCCUcgccccgaccucgggGGUC-GCGCcgGGGuCGCu -3'
miRNA:   3'- -GGCUCGUGGAa--------------CCGGuCGCG--CUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 28958 0.67 0.516197
Target:  5'- gCCGcauCGCCgaGGUCGGUgccgaggccGCGAGCGCc -3'
miRNA:   3'- -GGCuc-GUGGaaCCGGUCG---------CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 49855 0.67 0.516197
Target:  5'- cCCGAGgAUCgUUGGUCAcGaCGCGuuGCGCc -3'
miRNA:   3'- -GGCUCgUGG-AACCGGU-C-GCGCu-CGCG- -5'
23254 3' -59.6 NC_005259.1 + 13202 0.67 0.516197
Target:  5'- aCCaAGCACagcggGGCCAGCgGUGGGCc- -3'
miRNA:   3'- -GGcUCGUGgaa--CCGGUCG-CGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 60516 0.67 0.50621
Target:  5'- gUCGuaguGCGCCaUGGCCGgGC-CGGGaCGCa -3'
miRNA:   3'- -GGCu---CGUGGaACCGGU-CGcGCUC-GCG- -5'
23254 3' -59.6 NC_005259.1 + 37961 0.67 0.50621
Target:  5'- uUCGGGC-UCUUGGUCGGCaguGCGucguacuGCGCc -3'
miRNA:   3'- -GGCUCGuGGAACCGGUCG---CGCu------CGCG- -5'
23254 3' -59.6 NC_005259.1 + 7029 0.67 0.50621
Target:  5'- gCCGAGCGCCccGGCgGgguuuuucguuGCGCGAGa-- -3'
miRNA:   3'- -GGCUCGUGGaaCCGgU-----------CGCGCUCgcg -5'
23254 3' -59.6 NC_005259.1 + 25836 0.67 0.486491
Target:  5'- aCCGGGCcauACCUcgcggaugUGGUacucgauGUGCGGGCGUg -3'
miRNA:   3'- -GGCUCG---UGGA--------ACCGgu-----CGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 4600 0.67 0.486491
Target:  5'- aCCGccauaGGCACgCUgucgGGCCgguGGCGCGAGUu- -3'
miRNA:   3'- -GGC-----UCGUG-GAa---CCGG---UCGCGCUCGcg -5'
23254 3' -59.6 NC_005259.1 + 27041 0.67 0.486491
Target:  5'- uUGAGCuugGCCUUGGCCugAGCGaCGgucacGGCGa -3'
miRNA:   3'- gGCUCG---UGGAACCGG--UCGC-GC-----UCGCg -5'
23254 3' -59.6 NC_005259.1 + 50205 0.67 0.476769
Target:  5'- cCCGcucaAGCGCCgccucGUCaaucucgauccgAGCGCGGGCGCg -3'
miRNA:   3'- -GGC----UCGUGGaac--CGG------------UCGCGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 16498 0.67 0.476769
Target:  5'- cCCGcGCGCa-UGGCCGagagcgaggcGCuGCGAGCGUc -3'
miRNA:   3'- -GGCuCGUGgaACCGGU----------CG-CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 15379 0.67 0.476769
Target:  5'- gCGAGCuGCCgcaaccgUGGCC-GCGCacucccaaGGGUGCg -3'
miRNA:   3'- gGCUCG-UGGa------ACCGGuCGCG--------CUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 9970 0.67 0.476769
Target:  5'- cCCGAccaccGCACCggucgaggUGGCCAGC-CGGGgacugaucCGCg -3'
miRNA:   3'- -GGCU-----CGUGGa-------ACCGGUCGcGCUC--------GCG- -5'
23254 3' -59.6 NC_005259.1 + 30290 0.67 0.476769
Target:  5'- gUCGAGCuCUacggUGGCCcauuAGacgGCGAGCGCc -3'
miRNA:   3'- -GGCUCGuGGa---ACCGG----UCg--CGCUCGCG- -5'
23254 3' -59.6 NC_005259.1 + 3868 0.67 0.476769
Target:  5'- gUCGAGCGCCUcGaGCCcaccccgcAGCGCGAcaucGuCGCc -3'
miRNA:   3'- -GGCUCGUGGAaC-CGG--------UCGCGCU----C-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.