miRNA: 3'- -GUCGCGgUG-CGGCCU-GUCUAa-----CUCGU- -5'
miRNA: 3'- -GUCGCG----GUGCGGCCUGUCuaacUCGu -5'
miRNA: 3'- gucGCGGUGCG--------GCCUguCUAACUCGu -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23254 | 5' | -57.2 | NC_005259.1 | + | 58583 | 0.69 | 0.442185 |
|
Target: 5'- gCGGCGCgGCuGCCGGGcCGGAUcuuuucGAGCGc -3' miRNA: 3'- -GUCGCGgUG-CGGCCU-GUCUAa-----CUCGU- -5' |
|||||||
| 23254 | 5' | -57.2 | NC_005259.1 | + | 66256 | 0.69 | 0.491358 |
|
Target: 5'- gCAGCGCggccCGCGCCGGGCGGc---GGCu -3' miRNA: 3'- -GUCGCG----GUGCGGCCUGUCuaacUCGu -5' |
|||||||
| 23254 | 5' | -57.2 | NC_005259.1 | + | 68539 | 0.68 | 0.532444 |
|
Target: 5'- --cCGCCACGCgucgacauCGGGguGGUUGAGCc -3' miRNA: 3'- gucGCGGUGCG--------GCCUguCUAACUCGu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home