Results 21 - 40 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 61032 | 0.7 | 0.289701 |
Target: 5'- gUGGCGGCGAGGUcgaccgaCGGGCggcucaccuUGUGCCGGg -3' miRNA: 3'- gGCUGCCGCUCCG-------GCCUG---------ACGUGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 64611 | 0.7 | 0.283649 |
Target: 5'- aCUGACGGCGAGcGCgaCGGGCagcaGCGCCc- -3' miRNA: 3'- -GGCUGCCGCUC-CG--GCCUGa---CGUGGcu -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 25422 | 0.69 | 0.356593 |
Target: 5'- -gGACGGCGAGGUCgaGGAaUGCgaGCCGu -3' miRNA: 3'- ggCUGCCGCUCCGG--CCUgACG--UGGCu -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 33599 | 0.69 | 0.348736 |
Target: 5'- aCCGA-GGCGcGGUCGaGCUGCAaCCGGc -3' miRNA: 3'- -GGCUgCCGCuCCGGCcUGACGU-GGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 5068 | 0.69 | 0.348736 |
Target: 5'- aUCGugGGCcgggucgacGGGCCGGugU-CACCGGc -3' miRNA: 3'- -GGCugCCGc--------UCCGGCCugAcGUGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 58563 | 0.69 | 0.348736 |
Target: 5'- uCgGGCGGUuGGGCCGGaucgcggcgcgGCUGCcggGCCGGa -3' miRNA: 3'- -GgCUGCCGcUCCGGCC-----------UGACG---UGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 42506 | 0.69 | 0.344081 |
Target: 5'- uCCGGCGGUGuGGCCaGcagccguccggccccGAUggGCACCGAg -3' miRNA: 3'- -GGCUGCCGCuCCGG-C---------------CUGa-CGUGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 7181 | 0.69 | 0.333395 |
Target: 5'- aCCGGCGaGUGcccGGCCugcGGAC-GCACCGGg -3' miRNA: 3'- -GGCUGC-CGCu--CCGG---CCUGaCGUGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 45619 | 0.69 | 0.318555 |
Target: 5'- cUCGAUGcccGCcGGGCCGGGCagcGCGCCGGu -3' miRNA: 3'- -GGCUGC---CGcUCCGGCCUGa--CGUGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 41724 | 0.69 | 0.318555 |
Target: 5'- aCCGGCGGCGGGGa-GGACaccGCcUCGAc -3' miRNA: 3'- -GGCUGCCGCUCCggCCUGa--CGuGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 67044 | 0.69 | 0.318555 |
Target: 5'- cUCGACGGCGAGcacCCG---UGCGCCGAu -3' miRNA: 3'- -GGCUGCCGCUCc--GGCcugACGUGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 36929 | 0.69 | 0.318555 |
Target: 5'- gCCGACGGUGAGuGUU--GCUGuCACCGGg -3' miRNA: 3'- -GGCUGCCGCUC-CGGccUGAC-GUGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 47171 | 0.68 | 0.39771 |
Target: 5'- aCCGuaGCGGCGaAGGUCGG-CgGUGCCGu -3' miRNA: 3'- -GGC--UGCCGC-UCCGGCCuGaCGUGGCu -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 17763 | 0.68 | 0.39771 |
Target: 5'- gCCGcCGcGCGccGGGCCGaGC-GCACCGAg -3' miRNA: 3'- -GGCuGC-CGC--UCCGGCcUGaCGUGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 24227 | 0.68 | 0.389246 |
Target: 5'- gUGAcCGGCGGGGCCGag--GCACgCGAg -3' miRNA: 3'- gGCU-GCCGCUCCGGCcugaCGUG-GCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 26138 | 0.68 | 0.372676 |
Target: 5'- uCCGACGccgcCGAGGCCGaGCaGC-CCGAa -3' miRNA: 3'- -GGCUGCc---GCUCCGGCcUGaCGuGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 8803 | 0.68 | 0.372676 |
Target: 5'- uUGGCGaggaucuucucGCGccGGGCCGGugaguugacgcGCUGCGCCGAc -3' miRNA: 3'- gGCUGC-----------CGC--UCCGGCC-----------UGACGUGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 60649 | 0.68 | 0.372676 |
Target: 5'- uUCGACGGUGAuuucggGGCCauGACgcacgcguucUGCACCGAg -3' miRNA: 3'- -GGCUGCCGCU------CCGGc-CUG----------ACGUGGCU- -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 11300 | 0.68 | 0.372676 |
Target: 5'- gUCGACGGgcgUGAGGCCGaGACggGCGCg-- -3' miRNA: 3'- -GGCUGCC---GCUCCGGC-CUGa-CGUGgcu -5' |
|||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 7334 | 0.68 | 0.406291 |
Target: 5'- gCCGAguaCGuCGAGGCCGGACagacguucgUGCugUGGc -3' miRNA: 3'- -GGCU---GCcGCUCCGGCCUG---------ACGugGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home