Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 737 | 0.66 | 0.504808 |
Target: 5'- aCCGGCGGUGccuacgccGCCGGugccuaccgcguccACcGCGCCGAg -3' miRNA: 3'- -GGCUGCCGCuc------CGGCC--------------UGaCGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 28236 | 0.66 | 0.516521 |
Target: 5'- gUCGGCGGCGGGGU-GGucgaucacgauccAUUGC-CCGAa -3' miRNA: 3'- -GGCUGCCGCUCCGgCC-------------UGACGuGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 41498 | 0.66 | 0.517502 |
Target: 5'- cUCGGCGGUGgcGGGCagaccguGGAuCUGCACgGGg -3' miRNA: 3'- -GGCUGCCGC--UCCGg------CCU-GACGUGgCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 7427 | 0.66 | 0.517502 |
Target: 5'- gUCGGCGGUGcccGcGCCGcauGGCaGCGCCGAg -3' miRNA: 3'- -GGCUGCCGCu--C-CGGC---CUGaCGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 13335 | 0.66 | 0.517502 |
Target: 5'- aCCcACGGCGGGaCCGccccGCcGCACCGAu -3' miRNA: 3'- -GGcUGCCGCUCcGGCc---UGaCGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 3298 | 0.66 | 0.527352 |
Target: 5'- gCCGGucccuCGGCGAGcGCUGcgucGACgugaGCGCCGGg -3' miRNA: 3'- -GGCU-----GCCGCUC-CGGC----CUGa---CGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 16835 | 0.66 | 0.527352 |
Target: 5'- uCCGACacaaGGCGGguGGCCauGACUGaUACCGGc -3' miRNA: 3'- -GGCUG----CCGCU--CCGGc-CUGAC-GUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 37499 | 0.66 | 0.527352 |
Target: 5'- cCCGGCGGUGA-GCaCGauGCUGC-CCGAc -3' miRNA: 3'- -GGCUGCCGCUcCG-GCc-UGACGuGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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