miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 3' -61.3 NC_005259.1 + 36929 0.69 0.318555
Target:  5'- gCCGACGGUGAGuGUU--GCUGuCACCGGg -3'
miRNA:   3'- -GGCUGCCGCUC-CGGccUGAC-GUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 37499 0.66 0.527352
Target:  5'- cCCGGCGGUGA-GCaCGauGCUGC-CCGAc -3'
miRNA:   3'- -GGCUGCCGCUcCG-GCc-UGACGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 38740 0.73 0.178229
Target:  5'- aCCGGCGGUGgcccgccgcAGGCCGGugaGCUGCGCg-- -3'
miRNA:   3'- -GGCUGCCGC---------UCCGGCC---UGACGUGgcu -5'
23255 3' -61.3 NC_005259.1 + 41498 0.66 0.517502
Target:  5'- cUCGGCGGUGgcGGGCagaccguGGAuCUGCACgGGg -3'
miRNA:   3'- -GGCUGCCGC--UCCGg------CCU-GACGUGgCU- -5'
23255 3' -61.3 NC_005259.1 + 41724 0.69 0.318555
Target:  5'- aCCGGCGGCGGGGa-GGACaccGCcUCGAc -3'
miRNA:   3'- -GGCUGCCGCUCCggCCUGa--CGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 42466 0.67 0.469457
Target:  5'- gCCGAcuaCGGCGAGGCCcGGCccGUagaGCCGu -3'
miRNA:   3'- -GGCU---GCCGCUCCGGcCUGa-CG---UGGCu -5'
23255 3' -61.3 NC_005259.1 + 42506 0.69 0.344081
Target:  5'- uCCGGCGGUGuGGCCaGcagccguccggccccGAUggGCACCGAg -3'
miRNA:   3'- -GGCUGCCGCuCCGG-C---------------CUGa-CGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 42945 0.73 0.202034
Target:  5'- gCCGugGGCGAGGCCGccgUUGUcgaacgggauGCCGGg -3'
miRNA:   3'- -GGCugCCGCUCCGGCcu-GACG----------UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 43956 0.71 0.269915
Target:  5'- gCGAUgGGCGGGGCCgccgccugaccgaGGGCgGUGCCGAu -3'
miRNA:   3'- gGCUG-CCGCUCCGG-------------CCUGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 44870 0.66 0.47889
Target:  5'- aCCGGCGGCGAGaUCcGAC-GCGCCc- -3'
miRNA:   3'- -GGCUGCCGCUCcGGcCUGaCGUGGcu -5'
23255 3' -61.3 NC_005259.1 + 45311 0.67 0.436317
Target:  5'- gUGACGcCGAGGCCgccgccgaacugcguGGcCUGCGCCGc -3'
miRNA:   3'- gGCUGCcGCUCCGG---------------CCuGACGUGGCu -5'
23255 3' -61.3 NC_005259.1 + 45619 0.69 0.318555
Target:  5'- cUCGAUGcccGCcGGGCCGGGCagcGCGCCGGu -3'
miRNA:   3'- -GGCUGC---CGcUCCGGCCUGa--CGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 46397 0.7 0.304217
Target:  5'- gCCGcGCGGUGAGGgcaucgaaaCCGGGCugUGCACCc- -3'
miRNA:   3'- -GGC-UGCCGCUCC---------GGCCUG--ACGUGGcu -5'
23255 3' -61.3 NC_005259.1 + 47171 0.68 0.39771
Target:  5'- aCCGuaGCGGCGaAGGUCGG-CgGUGCCGu -3'
miRNA:   3'- -GGC--UGCCGC-UCCGGCCuGaCGUGGCu -5'
23255 3' -61.3 NC_005259.1 + 47605 0.66 0.498029
Target:  5'- uCUGGuCGGCGAGGCUGaGGuucUUGUcgucGCCGAg -3'
miRNA:   3'- -GGCU-GCCGCUCCGGC-CU---GACG----UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 51519 0.67 0.466646
Target:  5'- cUCGACGcGCGugaccucgugcacgGGGCCGGGCaagUGCACg-- -3'
miRNA:   3'- -GGCUGC-CGC--------------UCCGGCCUG---ACGUGgcu -5'
23255 3' -61.3 NC_005259.1 + 57461 0.72 0.217608
Target:  5'- aCGcuGCGGC-AGGCCGGug-GCACCGGa -3'
miRNA:   3'- gGC--UGCCGcUCCGGCCugaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 58408 0.73 0.181405
Target:  5'- aCCGGCGGCGAucagagauccaccgGGCa-GAUUGCGCUGAu -3'
miRNA:   3'- -GGCUGCCGCU--------------CCGgcCUGACGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 58563 0.69 0.348736
Target:  5'- uCgGGCGGUuGGGCCGGaucgcggcgcgGCUGCcggGCCGGa -3'
miRNA:   3'- -GgCUGCCGcUCCGGCC-----------UGACG---UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 60344 0.66 0.488415
Target:  5'- -aGGCGGCGAucaGGUCGaGGCccUGC-CCGAa -3'
miRNA:   3'- ggCUGCCGCU---CCGGC-CUG--ACGuGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.