miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 3' -61.3 NC_005259.1 + 42945 0.73 0.202034
Target:  5'- gCCGugGGCGAGGCCGccgUUGUcgaacgggauGCCGGg -3'
miRNA:   3'- -GGCugCCGCUCCGGCcu-GACG----------UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 42506 0.69 0.344081
Target:  5'- uCCGGCGGUGuGGCCaGcagccguccggccccGAUggGCACCGAg -3'
miRNA:   3'- -GGCUGCCGCuCCGG-C---------------CUGa-CGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 42466 0.67 0.469457
Target:  5'- gCCGAcuaCGGCGAGGCCcGGCccGUagaGCCGu -3'
miRNA:   3'- -GGCU---GCCGCUCCGGcCUGa-CG---UGGCu -5'
23255 3' -61.3 NC_005259.1 + 41724 0.69 0.318555
Target:  5'- aCCGGCGGCGGGGa-GGACaccGCcUCGAc -3'
miRNA:   3'- -GGCUGCCGCUCCggCCUGa--CGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 41498 0.66 0.517502
Target:  5'- cUCGGCGGUGgcGGGCagaccguGGAuCUGCACgGGg -3'
miRNA:   3'- -GGCUGCCGC--UCCGg------CCU-GACGUGgCU- -5'
23255 3' -61.3 NC_005259.1 + 38740 0.73 0.178229
Target:  5'- aCCGGCGGUGgcccgccgcAGGCCGGugaGCUGCGCg-- -3'
miRNA:   3'- -GGCUGCCGC---------UCCGGCC---UGACGUGgcu -5'
23255 3' -61.3 NC_005259.1 + 37499 0.66 0.527352
Target:  5'- cCCGGCGGUGA-GCaCGauGCUGC-CCGAc -3'
miRNA:   3'- -GGCUGCCGCUcCG-GCc-UGACGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 36929 0.69 0.318555
Target:  5'- gCCGACGGUGAGuGUU--GCUGuCACCGGg -3'
miRNA:   3'- -GGCUGCCGCUC-CGGccUGAC-GUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 35992 1.1 0.000358
Target:  5'- aCCGACGGCGAGGCCGGACUGCACCGAg -3'
miRNA:   3'- -GGCUGCCGCUCCGGCCUGACGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 34568 0.74 0.152977
Target:  5'- gCCGACGGCGAGGUucuCGGACagGCAgacgcgcggugUCGAc -3'
miRNA:   3'- -GGCUGCCGCUCCG---GCCUGa-CGU-----------GGCU- -5'
23255 3' -61.3 NC_005259.1 + 33599 0.69 0.348736
Target:  5'- aCCGA-GGCGcGGUCGaGCUGCAaCCGGc -3'
miRNA:   3'- -GGCUgCCGCuCCGGCcUGACGU-GGCU- -5'
23255 3' -61.3 NC_005259.1 + 30999 0.68 0.412367
Target:  5'- cCCG-CcGUGGGGCCGGAaCUGUccacacgugaucguGCCGAu -3'
miRNA:   3'- -GGCuGcCGCUCCGGCCU-GACG--------------UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 30827 0.73 0.182782
Target:  5'- uCCGGCGcGcCGAGGUCGGcaacCUGCACCu- -3'
miRNA:   3'- -GGCUGC-C-GCUCCGGCCu---GACGUGGcu -5'
23255 3' -61.3 NC_005259.1 + 29883 0.71 0.260437
Target:  5'- cCCGAUGuCGAGGUCGGcaagcacaaggggugGCUGC-CCGAg -3'
miRNA:   3'- -GGCUGCcGCUCCGGCC---------------UGACGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 28236 0.66 0.516521
Target:  5'- gUCGGCGGCGGGGU-GGucgaucacgauccAUUGC-CCGAa -3'
miRNA:   3'- -GGCUGCCGCUCCGgCC-------------UGACGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 27389 0.67 0.46012
Target:  5'- aCCGGCGGCGGuGUCGG-CaGCGgCGGc -3'
miRNA:   3'- -GGCUGCCGCUcCGGCCuGaCGUgGCU- -5'
23255 3' -61.3 NC_005259.1 + 26823 0.71 0.23996
Target:  5'- aCCGGCGGUGGuGCCGGGgcgguCUGCucgggcaggauGCCGAg -3'
miRNA:   3'- -GGCUGCCGCUcCGGCCU-----GACG-----------UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 26441 0.67 0.469457
Target:  5'- gCCGAgCgGGCG-GGCCGG--UGgGCCGAu -3'
miRNA:   3'- -GGCU-G-CCGCuCCGGCCugACgUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 26138 0.68 0.372676
Target:  5'- uCCGACGccgcCGAGGCCGaGCaGC-CCGAa -3'
miRNA:   3'- -GGCUGCc---GCUCCGGCcUGaCGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 25964 0.71 0.23996
Target:  5'- gCCGACGccuGCGAuGaGaCCGGGCaGCGCCGAg -3'
miRNA:   3'- -GGCUGC---CGCU-C-C-GGCCUGaCGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.