Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23255 | 3' | -61.3 | NC_005259.1 | + | 25422 | 0.69 | 0.356593 |
Target: 5'- -gGACGGCGAGGUCgaGGAaUGCgaGCCGu -3' miRNA: 3'- ggCUGCCGCUCCGG--CCUgACG--UGGCu -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 24904 | 0.67 | 0.441747 |
Target: 5'- -gGACGGCGA-GCgGGuCUaCACCGAa -3' miRNA: 3'- ggCUGCCGCUcCGgCCuGAcGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 24227 | 0.68 | 0.389246 |
Target: 5'- gUGAcCGGCGGGGCCGag--GCACgCGAg -3' miRNA: 3'- gGCU-GCCGCUCCGGCcugaCGUG-GCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 23655 | 0.82 | 0.044943 |
Target: 5'- gCCGACGGCGAcGGCUGGAC--CGCCGAc -3' miRNA: 3'- -GGCUGCCGCU-CCGGCCUGacGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 23304 | 0.67 | 0.432718 |
Target: 5'- aUCGGggucCGGCGcGGUCGGugU-CGCCGAg -3' miRNA: 3'- -GGCU----GCCGCuCCGGCCugAcGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 19249 | 0.66 | 0.488415 |
Target: 5'- aUCGAUGGCcgccuGCCGGGCcGC-CCGAu -3' miRNA: 3'- -GGCUGCCGcuc--CGGCCUGaCGuGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 18353 | 0.67 | 0.432718 |
Target: 5'- gCCGACGGCGAcauguGGCacaugcccgaGGGCgGUAgCGAg -3' miRNA: 3'- -GGCUGCCGCU-----CCGg---------CCUGaCGUgGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 17803 | 0.67 | 0.450882 |
Target: 5'- gCGAUaGCGAGGCCGGugaGCU-CAgCGAg -3' miRNA: 3'- gGCUGcCGCUCCGGCC---UGAcGUgGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 17763 | 0.68 | 0.39771 |
Target: 5'- gCCGcCGcGCGccGGGCCGaGC-GCACCGAg -3' miRNA: 3'- -GGCuGC-CGC--UCCGGCcUGaCGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 16835 | 0.66 | 0.527352 |
Target: 5'- uCCGACacaaGGCGGguGGCCauGACUGaUACCGGc -3' miRNA: 3'- -GGCUG----CCGCU--CCGGc-CUGAC-GUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 16585 | 0.7 | 0.310607 |
Target: 5'- gCCGAgGacaucgcccGCGAGGCCaucGGACUGUucaacggGCCGAg -3' miRNA: 3'- -GGCUgC---------CGCUCCGG---CCUGACG-------UGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 14650 | 0.66 | 0.498029 |
Target: 5'- aCGAUGGCGuGGGCucagcccgacuCGGGCcgcgUGCACuCGAu -3' miRNA: 3'- gGCUGCCGC-UCCG-----------GCCUG----ACGUG-GCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 13454 | 0.66 | 0.498029 |
Target: 5'- aCCGuCGGCGcGGcGCUGGugcucaccgcGCUGC-CCGAc -3' miRNA: 3'- -GGCuGCCGC-UC-CGGCC----------UGACGuGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 13335 | 0.66 | 0.517502 |
Target: 5'- aCCcACGGCGGGaCCGccccGCcGCACCGAu -3' miRNA: 3'- -GGcUGCCGCUCcGGCc---UGaCGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 11775 | 0.66 | 0.488415 |
Target: 5'- cUCGACGGCGAGGgagucccacacaUCGGGC-GCgACCc- -3' miRNA: 3'- -GGCUGCCGCUCC------------GGCCUGaCG-UGGcu -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 11300 | 0.68 | 0.372676 |
Target: 5'- gUCGACGGgcgUGAGGCCGaGACggGCGCg-- -3' miRNA: 3'- -GGCUGCC---GCUCCGGC-CUGa-CGUGgcu -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 10998 | 0.68 | 0.414987 |
Target: 5'- cUCGcaACGGCaccGcGCCGGAC-GCGCCGAg -3' miRNA: 3'- -GGC--UGCCGcu-C-CGGCCUGaCGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 8803 | 0.68 | 0.372676 |
Target: 5'- uUGGCGaggaucuucucGCGccGGGCCGGugaguugacgcGCUGCGCCGAc -3' miRNA: 3'- gGCUGC-----------CGC--UCCGGCC-----------UGACGUGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 8330 | 0.78 | 0.083668 |
Target: 5'- gCCGACGGCGAucaGCCGGucacGCUGCuGCCGGu -3' miRNA: 3'- -GGCUGCCGCUc--CGGCC----UGACG-UGGCU- -5' |
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23255 | 3' | -61.3 | NC_005259.1 | + | 7830 | 0.77 | 0.093076 |
Target: 5'- cCCGGCGGCGgucaccccuuacGGGaCGGACcGCGCCGAc -3' miRNA: 3'- -GGCUGCCGC------------UCCgGCCUGaCGUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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