miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 3' -61.3 NC_005259.1 + 35992 1.1 0.000358
Target:  5'- aCCGACGGCGAGGCCGGACUGCACCGAg -3'
miRNA:   3'- -GGCUGCCGCUCCGGCCUGACGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 23655 0.82 0.044943
Target:  5'- gCCGACGGCGAcGGCUGGAC--CGCCGAc -3'
miRNA:   3'- -GGCUGCCGCU-CCGGCCUGacGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 4783 0.81 0.052916
Target:  5'- uCCGcaACGGCGAGGCCaGGuACUGC-CCGAg -3'
miRNA:   3'- -GGC--UGCCGCUCCGG-CC-UGACGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 8330 0.78 0.083668
Target:  5'- gCCGACGGCGAucaGCCGGucacGCUGCuGCCGGu -3'
miRNA:   3'- -GGCUGCCGCUc--CGGCC----UGACG-UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 7830 0.77 0.093076
Target:  5'- cCCGGCGGCGgucaccccuuacGGGaCGGACcGCGCCGAc -3'
miRNA:   3'- -GGCUGCCGC------------UCCgGCCUGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 60763 0.77 0.106248
Target:  5'- gUCGGCucGGCGAGGuuGGGCUGCG-CGAa -3'
miRNA:   3'- -GGCUG--CCGCUCCggCCUGACGUgGCU- -5'
23255 3' -61.3 NC_005259.1 + 34568 0.74 0.152977
Target:  5'- gCCGACGGCGAGGUucuCGGACagGCAgacgcgcggugUCGAc -3'
miRNA:   3'- -GGCUGCCGCUCCG---GCCUGa-CGU-----------GGCU- -5'
23255 3' -61.3 NC_005259.1 + 38740 0.73 0.178229
Target:  5'- aCCGGCGGUGgcccgccgcAGGCCGGugaGCUGCGCg-- -3'
miRNA:   3'- -GGCUGCCGC---------UCCGGCC---UGACGUGgcu -5'
23255 3' -61.3 NC_005259.1 + 58408 0.73 0.181405
Target:  5'- aCCGGCGGCGAucagagauccaccgGGCa-GAUUGCGCUGAu -3'
miRNA:   3'- -GGCUGCCGCU--------------CCGgcCUGACGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 30827 0.73 0.182782
Target:  5'- uCCGGCGcGcCGAGGUCGGcaacCUGCACCu- -3'
miRNA:   3'- -GGCUGC-C-GCUCCGGCCu---GACGUGGcu -5'
23255 3' -61.3 NC_005259.1 + 42945 0.73 0.202034
Target:  5'- gCCGugGGCGAGGCCGccgUUGUcgaacgggauGCCGGg -3'
miRNA:   3'- -GGCugCCGCUCCGGCcu-GACG----------UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 64023 0.72 0.207115
Target:  5'- cCCGaggcGCGGCGAGGCCGG--UG-ACCGGa -3'
miRNA:   3'- -GGC----UGCCGCUCCGGCCugACgUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 57461 0.72 0.217608
Target:  5'- aCGcuGCGGC-AGGCCGGug-GCACCGGa -3'
miRNA:   3'- gGC--UGCCGcUCCGGCCugaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 25964 0.71 0.23996
Target:  5'- gCCGACGccuGCGAuGaGaCCGGGCaGCGCCGAg -3'
miRNA:   3'- -GGCUGC---CGCU-C-C-GGCCUGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 26823 0.71 0.23996
Target:  5'- aCCGGCGGUGGuGCCGGGgcgguCUGCucgggcaggauGCCGAg -3'
miRNA:   3'- -GGCUGCCGCUcCGGCCU-----GACG-----------UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 29883 0.71 0.260437
Target:  5'- cCCGAUGuCGAGGUCGGcaagcacaaggggugGCUGC-CCGAg -3'
miRNA:   3'- -GGCUGCcGCUCCGGCC---------------UGACGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 43956 0.71 0.269915
Target:  5'- gCGAUgGGCGGGGCCgccgccugaccgaGGGCgGUGCCGAu -3'
miRNA:   3'- gGCUG-CCGCUCCGG-------------CCUGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 64611 0.7 0.283649
Target:  5'- aCUGACGGCGAGcGCgaCGGGCagcaGCGCCc- -3'
miRNA:   3'- -GGCUGCCGCUC-CG--GCCUGa---CGUGGcu -5'
23255 3' -61.3 NC_005259.1 + 61032 0.7 0.289701
Target:  5'- gUGGCGGCGAGGUcgaccgaCGGGCggcucaccuUGUGCCGGg -3'
miRNA:   3'- gGCUGCCGCUCCG-------GCCUG---------ACGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 60621 0.7 0.304217
Target:  5'- -aGGCGGCGAGGUgUGGAaCUGCGCg-- -3'
miRNA:   3'- ggCUGCCGCUCCG-GCCU-GACGUGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.