miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 3' -61.3 NC_005259.1 + 17803 0.67 0.450882
Target:  5'- gCGAUaGCGAGGCCGGugaGCU-CAgCGAg -3'
miRNA:   3'- gGCUGcCGCUCCGGCC---UGAcGUgGCU- -5'
23255 3' -61.3 NC_005259.1 + 24904 0.67 0.441747
Target:  5'- -gGACGGCGA-GCgGGuCUaCACCGAa -3'
miRNA:   3'- ggCUGCCGCUcCGgCCuGAcGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 45311 0.67 0.436317
Target:  5'- gUGACGcCGAGGCCgccgccgaacugcguGGcCUGCGCCGc -3'
miRNA:   3'- gGCUGCcGCUCCGG---------------CCuGACGUGGCu -5'
23255 3' -61.3 NC_005259.1 + 23304 0.67 0.432718
Target:  5'- aUCGGggucCGGCGcGGUCGGugU-CGCCGAg -3'
miRNA:   3'- -GGCU----GCCGCuCCGGCCugAcGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 18353 0.67 0.432718
Target:  5'- gCCGACGGCGAcauguGGCacaugcccgaGGGCgGUAgCGAg -3'
miRNA:   3'- -GGCUGCCGCU-----CCGg---------CCUGaCGUgGCU- -5'
23255 3' -61.3 NC_005259.1 + 10998 0.68 0.414987
Target:  5'- cUCGcaACGGCaccGcGCCGGAC-GCGCCGAg -3'
miRNA:   3'- -GGC--UGCCGcu-C-CGGCCUGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 30999 0.68 0.412367
Target:  5'- cCCG-CcGUGGGGCCGGAaCUGUccacacgugaucguGCCGAu -3'
miRNA:   3'- -GGCuGcCGCUCCGGCCU-GACG--------------UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 7334 0.68 0.406291
Target:  5'- gCCGAguaCGuCGAGGCCGGACagacguucgUGCugUGGc -3'
miRNA:   3'- -GGCU---GCcGCUCCGGCCUG---------ACGugGCU- -5'
23255 3' -61.3 NC_005259.1 + 17763 0.68 0.39771
Target:  5'- gCCGcCGcGCGccGGGCCGaGC-GCACCGAg -3'
miRNA:   3'- -GGCuGC-CGC--UCCGGCcUGaCGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 47171 0.68 0.39771
Target:  5'- aCCGuaGCGGCGaAGGUCGG-CgGUGCCGu -3'
miRNA:   3'- -GGC--UGCCGC-UCCGGCCuGaCGUGGCu -5'
23255 3' -61.3 NC_005259.1 + 24227 0.68 0.389246
Target:  5'- gUGAcCGGCGGGGCCGag--GCACgCGAg -3'
miRNA:   3'- gGCU-GCCGCUCCGGCcugaCGUG-GCU- -5'
23255 3' -61.3 NC_005259.1 + 26138 0.68 0.372676
Target:  5'- uCCGACGccgcCGAGGCCGaGCaGC-CCGAa -3'
miRNA:   3'- -GGCUGCc---GCUCCGGCcUGaCGuGGCU- -5'
23255 3' -61.3 NC_005259.1 + 4257 0.68 0.372676
Target:  5'- cUCGACuGCGAGGacaaCGGgcgGCUGCGCUGc -3'
miRNA:   3'- -GGCUGcCGCUCCg---GCC---UGACGUGGCu -5'
23255 3' -61.3 NC_005259.1 + 11300 0.68 0.372676
Target:  5'- gUCGACGGgcgUGAGGCCGaGACggGCGCg-- -3'
miRNA:   3'- -GGCUGCC---GCUCCGGC-CUGa-CGUGgcu -5'
23255 3' -61.3 NC_005259.1 + 60649 0.68 0.372676
Target:  5'- uUCGACGGUGAuuucggGGCCauGACgcacgcguucUGCACCGAg -3'
miRNA:   3'- -GGCUGCCGCU------CCGGc-CUG----------ACGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 8803 0.68 0.372676
Target:  5'- uUGGCGaggaucuucucGCGccGGGCCGGugaguugacgcGCUGCGCCGAc -3'
miRNA:   3'- gGCUGC-----------CGC--UCCGGCC-----------UGACGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 25422 0.69 0.356593
Target:  5'- -gGACGGCGAGGUCgaGGAaUGCgaGCCGu -3'
miRNA:   3'- ggCUGCCGCUCCGG--CCUgACG--UGGCu -5'
23255 3' -61.3 NC_005259.1 + 5068 0.69 0.348736
Target:  5'- aUCGugGGCcgggucgacGGGCCGGugU-CACCGGc -3'
miRNA:   3'- -GGCugCCGc--------UCCGGCCugAcGUGGCU- -5'
23255 3' -61.3 NC_005259.1 + 58563 0.69 0.348736
Target:  5'- uCgGGCGGUuGGGCCGGaucgcggcgcgGCUGCcggGCCGGa -3'
miRNA:   3'- -GgCUGCCGcUCCGGCC-----------UGACG---UGGCU- -5'
23255 3' -61.3 NC_005259.1 + 33599 0.69 0.348736
Target:  5'- aCCGA-GGCGcGGUCGaGCUGCAaCCGGc -3'
miRNA:   3'- -GGCUgCCGCuCCGGCcUGACGU-GGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.