miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 5' -54.9 NC_005259.1 + 2093 0.67 0.773834
Target:  5'- -cUCGAUuucAUCGGCGAGGCCAa-- -3'
miRNA:   3'- ccAGCUGuacUAGUCGCUCCGGUggg -5'
23255 5' -54.9 NC_005259.1 + 33858 0.67 0.767909
Target:  5'- uGGUCGACucaagcaucugcucgGUGAgcaCAcGCGGGaaCCACCCg -3'
miRNA:   3'- -CCAGCUG---------------UACUa--GU-CGCUCc-GGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 56254 0.67 0.763931
Target:  5'- gGGaUCGGCGgccuUgAGCGccGCCGCCCg -3'
miRNA:   3'- -CC-AGCUGUacu-AgUCGCucCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 65111 0.67 0.7539
Target:  5'- cGGUCaguGCGUcaccGUCGGCGcaccggcGGCCACCCc -3'
miRNA:   3'- -CCAGc--UGUAc---UAGUCGCu------CCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 13298 0.67 0.7539
Target:  5'- -aUUGACGUGAgccagugCGGCGGGGUauaucuugguaACCCa -3'
miRNA:   3'- ccAGCUGUACUa------GUCGCUCCGg----------UGGG- -5'
23255 5' -54.9 NC_005259.1 + 58568 0.67 0.74375
Target:  5'- cGGUUgGGCcgGAUCgcGGCGcGGCUGCCg -3'
miRNA:   3'- -CCAG-CUGuaCUAG--UCGCuCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 29893 0.67 0.74375
Target:  5'- aGGUCGGCAagcacaaGGgGuGGCUGCCCg -3'
miRNA:   3'- -CCAGCUGUacuag--UCgCuCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 64817 0.67 0.74375
Target:  5'- cGG-CGGCAaugagcgugUGGUgacggacccugcUGGCGAuGGCCACCCu -3'
miRNA:   3'- -CCaGCUGU---------ACUA------------GUCGCU-CCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 9984 0.67 0.74375
Target:  5'- cGGUCGAgGUGGcCAGCcGGGGaCUgAUCCg -3'
miRNA:   3'- -CCAGCUgUACUaGUCG-CUCC-GG-UGGG- -5'
23255 5' -54.9 NC_005259.1 + 62851 0.67 0.74375
Target:  5'- cGGUUGACGagcagccgcUCGGCGcgagguAGGCCGCUCg -3'
miRNA:   3'- -CCAGCUGUacu------AGUCGC------UCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 66660 0.67 0.74375
Target:  5'- cGGUCGGCGgug-CuGCGAugcucaucGuGCCGCCCa -3'
miRNA:   3'- -CCAGCUGUacuaGuCGCU--------C-CGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 23143 0.68 0.723136
Target:  5'- --gUGACGUGGU--GCGAGaCCACCCu -3'
miRNA:   3'- ccaGCUGUACUAguCGCUCcGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 53961 0.68 0.712694
Target:  5'- cGGUgaACAUGGUCAGC-AGGCCGgUa -3'
miRNA:   3'- -CCAgcUGUACUAGUCGcUCCGGUgGg -5'
23255 5' -54.9 NC_005259.1 + 18345 0.68 0.712694
Target:  5'- uGGUCGACGccGA-CGGCGAcauguGGCacauGCCCg -3'
miRNA:   3'- -CCAGCUGUa-CUaGUCGCU-----CCGg---UGGG- -5'
23255 5' -54.9 NC_005259.1 + 32871 0.68 0.711646
Target:  5'- -cUCGACgcgcgcgGUGAUCgauucaccgggGGCGAGggugaGCCACCCg -3'
miRNA:   3'- ccAGCUG-------UACUAG-----------UCGCUC-----CGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 34816 0.68 0.702177
Target:  5'- -cUCGACGUaGAUCccauaAGCuuccugauAGGCCGCCCa -3'
miRNA:   3'- ccAGCUGUA-CUAG-----UCGc-------UCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 46663 0.68 0.691594
Target:  5'- cGGUUGAgGUucUCGGCGAGcucggccugaGCCGCCg -3'
miRNA:   3'- -CCAGCUgUAcuAGUCGCUC----------CGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 14957 0.68 0.691594
Target:  5'- aGGgCGGCAUGGa-GGCGcauucaAGGCCGCCg -3'
miRNA:   3'- -CCaGCUGUACUagUCGC------UCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 61924 0.68 0.68947
Target:  5'- cGUCGGCAgcucGGUCucucgcgcggguGcCGGGGCCACCg -3'
miRNA:   3'- cCAGCUGUa---CUAGu-----------C-GCUCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 67732 0.68 0.680956
Target:  5'- -cUCGAUccGAUacCGGCGgccacuAGGCCGCCCc -3'
miRNA:   3'- ccAGCUGuaCUA--GUCGC------UCCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.