miRNA display CGI


Results 81 - 100 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 44416 0.73 0.102688
Target:  5'- cCGCCUgACCGGCAgCGCCGaUACCgGCCc -3'
miRNA:   3'- -GCGGG-UGGCCGUgGCGGUcGUGG-CGG- -5'
23256 3' -64.7 NC_005259.1 + 44235 0.74 0.085437
Target:  5'- uCGCCCGCC-GCGCCGCCcGCG-CGCg -3'
miRNA:   3'- -GCGGGUGGcCGUGGCGGuCGUgGCGg -5'
23256 3' -64.7 NC_005259.1 + 43850 0.67 0.290135
Target:  5'- uCGCCaUGCCGaGCgcacccgugacgacACCGgCAGCguuGCCGCCg -3'
miRNA:   3'- -GCGG-GUGGC-CG--------------UGGCgGUCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 43811 0.72 0.136539
Target:  5'- aGUCCuuGCCGGgcgUACCGCCGGacacaggGCCGCCg -3'
miRNA:   3'- gCGGG--UGGCC---GUGGCGGUCg------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 43303 0.79 0.039306
Target:  5'- gCGCCCGCCugaauGGCugCGUUGGcCACCGCCu -3'
miRNA:   3'- -GCGGGUGG-----CCGugGCGGUC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 43255 0.68 0.247838
Target:  5'- cCGCCCgcGCCgGGUgccugagaguugACCG-CAGCGcCCGCCg -3'
miRNA:   3'- -GCGGG--UGG-CCG------------UGGCgGUCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 43000 0.69 0.201167
Target:  5'- cCGCCgaacagggacgagaaCaaACCGGCgauGCCGCCgAGCagGCCGCCg -3'
miRNA:   3'- -GCGG---------------G--UGGCCG---UGGCGG-UCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 42503 0.7 0.194334
Target:  5'- cCGUCCGgCGGUGUgGCCAGCAgCCGUCc -3'
miRNA:   3'- -GCGGGUgGCCGUGgCGGUCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 42216 0.73 0.11397
Target:  5'- uGCCCGCC-GCGCCGCCGuCcCCgGCCa -3'
miRNA:   3'- gCGGGUGGcCGUGGCGGUcGuGG-CGG- -5'
23256 3' -64.7 NC_005259.1 + 41715 0.68 0.266113
Target:  5'- cCGCCgcaUACCGGCGgCGgggaGGaCACCGCCu -3'
miRNA:   3'- -GCGG---GUGGCCGUgGCgg--UC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 41419 0.67 0.292155
Target:  5'- uGCCCACgaugugcaCGG-GCCGCCAuuuGCGCC-CCg -3'
miRNA:   3'- gCGGGUG--------GCCgUGGCGGU---CGUGGcGG- -5'
23256 3' -64.7 NC_005259.1 + 40880 0.72 0.13308
Target:  5'- aGCUCACCGGcCACCGUggcgggguCGGCAgCGUCc -3'
miRNA:   3'- gCGGGUGGCC-GUGGCG--------GUCGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 40661 0.71 0.158678
Target:  5'- uGCUCGCCGaGCAgCGCgAGCGCCuuggugcucaccgGCCc -3'
miRNA:   3'- gCGGGUGGC-CGUgGCGgUCGUGG-------------CGG- -5'
23256 3' -64.7 NC_005259.1 + 40563 0.7 0.184927
Target:  5'- gCGCCCGCgCGGUguuGCUGUCGGCGgcUCGCa -3'
miRNA:   3'- -GCGGGUG-GCCG---UGGCGGUCGU--GGCGg -5'
23256 3' -64.7 NC_005259.1 + 40451 0.71 0.15908
Target:  5'- gGCCUGCCGGUgugguugacguACUGCCGG-GCCGCg -3'
miRNA:   3'- gCGGGUGGCCG-----------UGGCGGUCgUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 39881 0.68 0.247838
Target:  5'- gCGCCCACaccgaaucguUGuCGCCGCC-GC-CCGCCu -3'
miRNA:   3'- -GCGGGUG----------GCcGUGGCGGuCGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 39405 0.74 0.087721
Target:  5'- gGUCCACCccgaGGCGgUGCCGGaCACCGUCa -3'
miRNA:   3'- gCGGGUGG----CCGUgGCGGUC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 39316 0.78 0.042627
Target:  5'- aCGCCCGCUGucGCGCCGCUGGUgACCGUCa -3'
miRNA:   3'- -GCGGGUGGC--CGUGGCGGUCG-UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 38942 0.66 0.334881
Target:  5'- uGUgC-CCGGUGCCGCU---GCCGCCg -3'
miRNA:   3'- gCGgGuGGCCGUGGCGGucgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 38733 0.7 0.194334
Target:  5'- cCGCCgUACCGGCGguggcCCGCCgcaggccggugAGCugCGCg -3'
miRNA:   3'- -GCGG-GUGGCCGU-----GGCGG-----------UCGugGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.