miRNA display CGI


Results 101 - 120 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 37693 0.69 0.207189
Target:  5'- uGCCCgcGCCGGacugauuuugccCUGCCagacccgaGGCACCGCCg -3'
miRNA:   3'- gCGGG--UGGCCgu----------GGCGG--------UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37651 0.87 0.009495
Target:  5'- cCGCaCCGCCGcCGCCGCCGGUGCCGCCa -3'
miRNA:   3'- -GCG-GGUGGCcGUGGCGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37459 0.68 0.23624
Target:  5'- gGCCCgAUUGGC-UgGCCA-CGCCGCCg -3'
miRNA:   3'- gCGGG-UGGCCGuGgCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37377 0.87 0.010311
Target:  5'- aCGCCC-UCGGCACCGCCcgccGCGCCGCCc -3'
miRNA:   3'- -GCGGGuGGCCGUGGCGGu---CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37237 0.68 0.241981
Target:  5'- gGCCCguGCCGGauuggcuGCCGCCGuuGCcaggcuugagGCCGCCc -3'
miRNA:   3'- gCGGG--UGGCCg------UGGCGGU--CG----------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37201 0.79 0.037234
Target:  5'- gGCCCuuGCCGcCACCGCCGcCGCCGCCg -3'
miRNA:   3'- gCGGG--UGGCcGUGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37150 0.71 0.143706
Target:  5'- gCGCauaGCCGuCACCGCCGcGC-CCGCCg -3'
miRNA:   3'- -GCGgg-UGGCcGUGGCGGU-CGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37057 0.67 0.2848
Target:  5'- cCGCCCACggCGGCGgUGuCCAcguccacGCACCGgCg -3'
miRNA:   3'- -GCGGGUG--GCCGUgGC-GGU-------CGUGGCgG- -5'
23256 3' -64.7 NC_005259.1 + 36969 0.73 0.108191
Target:  5'- cCGCCUcgGCCcGCACCGCCGaacgucGCACCGUUc -3'
miRNA:   3'- -GCGGG--UGGcCGUGGCGGU------CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 36856 0.8 0.032512
Target:  5'- cCGCCCGCU-GCGCCGUUgcuGGCACCGCCc -3'
miRNA:   3'- -GCGGGUGGcCGUGGCGG---UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 36700 0.72 0.129368
Target:  5'- uCGCCCGCCGaugagcucgugccGCucgacCCGCCGcGC-CCGCCg -3'
miRNA:   3'- -GCGGGUGGC-------------CGu----GGCGGU-CGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 36664 0.69 0.20923
Target:  5'- nCGCCCucGCCGcCGCCGCCGGggucuugACCGUCc -3'
miRNA:   3'- -GCGGG--UGGCcGUGGCGGUCg------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 36634 0.74 0.087721
Target:  5'- cCGCCCGCaaGGC-CCGCgauCAGCgaGCCGCCg -3'
miRNA:   3'- -GCGGGUGg-CCGuGGCG---GUCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 36219 0.69 0.21441
Target:  5'- gCGCgaUGCCGaGCACCuugGCCAGCGCgagCGCCu -3'
miRNA:   3'- -GCGg-GUGGC-CGUGG---CGGUCGUG---GCGG- -5'
23256 3' -64.7 NC_005259.1 + 35844 0.71 0.155103
Target:  5'- cCGCCCGCgagcacaGGUccGCCGCCGcguccaccGCAgCCGCCg -3'
miRNA:   3'- -GCGGGUGg------CCG--UGGCGGU--------CGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35727 0.68 0.230614
Target:  5'- cCGCCCGacgacCCGGCGCUGCCcGGCcCCa-- -3'
miRNA:   3'- -GCGGGU-----GGCCGUGGCGG-UCGuGGcgg -5'
23256 3' -64.7 NC_005259.1 + 35614 0.66 0.320148
Target:  5'- gGCCaCGCUGcGUcgaguaguucggGCCGCCGcCGCUGCCg -3'
miRNA:   3'- gCGG-GUGGC-CG------------UGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35507 0.77 0.058871
Target:  5'- gGCCCcguuGCCGcCGCCGCCGGgcaCACCGCCc -3'
miRNA:   3'- gCGGG----UGGCcGUGGCGGUC---GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35456 1.09 0.000174
Target:  5'- gCGCCCACCGGCACCGCCAGCACCGCCc -3'
miRNA:   3'- -GCGGGUGGCCGUGGCGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35268 0.67 0.278892
Target:  5'- gCGCCCGCCG----CGCCGGggUCGCCg -3'
miRNA:   3'- -GCGGGUGGCcgugGCGGUCguGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.