miRNA display CGI


Results 61 - 80 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 45732 0.72 0.129701
Target:  5'- gCGCaCCACCGagGCCGC--GCACCGCCu -3'
miRNA:   3'- -GCG-GGUGGCcgUGGCGguCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12322 0.72 0.129701
Target:  5'- uGCgCACCGcCGCCaGCuCAcGCACCGCCg -3'
miRNA:   3'- gCGgGUGGCcGUGG-CG-GU-CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 36700 0.72 0.129368
Target:  5'- uCGCCCGCCGaugagcucgugccGCucgacCCGCCGcGC-CCGCCg -3'
miRNA:   3'- -GCGGGUGGC-------------CGu----GGCGGU-CGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 8040 0.72 0.126403
Target:  5'- uCGCgaaCuguCCGaCACCGCCGGuCGCCGCCg -3'
miRNA:   3'- -GCGg--Gu--GGCcGUGGCGGUC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 66752 0.72 0.126403
Target:  5'- uGCUgcCCGGC-CUGCCAGUcgACCGCCu -3'
miRNA:   3'- gCGGguGGCCGuGGCGGUCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 51473 0.72 0.122864
Target:  5'- uGCCC-UCGGCgacccacACCGCCGGggauaggucgaCGCCGCCg -3'
miRNA:   3'- gCGGGuGGCCG-------UGGCGGUC-----------GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12225 0.72 0.120037
Target:  5'- cCGCCCGCUGGCcgggcaAUgGUCA-CACCGCCu -3'
miRNA:   3'- -GCGGGUGGCCG------UGgCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12546 0.72 0.120037
Target:  5'- aGCCC-CaCGGCAUUGCCgggguGGC-CCGCCa -3'
miRNA:   3'- gCGGGuG-GCCGUGGCGG-----UCGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12982 0.72 0.119108
Target:  5'- gCGCCCACCGuggugcucgcguucGCACUcgGCUA-CGCCGCCg -3'
miRNA:   3'- -GCGGGUGGC--------------CGUGG--CGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 30184 0.71 0.155103
Target:  5'- cCGCCCGCaCaGCAcuaccCCGUCGGUGcCCGCCg -3'
miRNA:   3'- -GCGGGUG-GcCGU-----GGCGGUCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 6423 0.71 0.163149
Target:  5'- gGCCCGaccucgccgaugUCGGCACCGUcgcgcugaucggCAGCGUCGCCg -3'
miRNA:   3'- gCGGGU------------GGCCGUGGCG------------GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 60269 0.71 0.163149
Target:  5'- uGgCCACCaGCGCUGCCGG-GCgGCCa -3'
miRNA:   3'- gCgGGUGGcCGUGGCGGUCgUGgCGG- -5'
23256 3' -64.7 NC_005259.1 + 48029 0.71 0.16151
Target:  5'- gCGCCCAcgauguugaccaccCCGGUggccacgGCgGgUAGCGCCGCCg -3'
miRNA:   3'- -GCGGGU--------------GGCCG-------UGgCgGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 33121 0.71 0.160696
Target:  5'- gGgCCACgCGGCAgCCGCCGcGCgugaucuugccguagACCGCCu -3'
miRNA:   3'- gCgGGUG-GCCGU-GGCGGU-CG---------------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 40451 0.71 0.15908
Target:  5'- gGCCUGCCGGUgugguugacguACUGCCGG-GCCGCg -3'
miRNA:   3'- gCGGGUGGCCG-----------UGGCGGUCgUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 40661 0.71 0.158678
Target:  5'- uGCUCGCCGaGCAgCGCgAGCGCCuuggugcucaccgGCCc -3'
miRNA:   3'- gCGGGUGGC-CGUgGCGgUCGUGG-------------CGG- -5'
23256 3' -64.7 NC_005259.1 + 25057 0.71 0.158678
Target:  5'- aGCCCguuuucaggcaagGgUGGCGCUGCCAcCGCCGCUg -3'
miRNA:   3'- gCGGG-------------UgGCCGUGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 28751 0.71 0.156683
Target:  5'- gCGCCCgagcgugagaucgucGCCGGUGCCGacgaGGUAcCCGCCg -3'
miRNA:   3'- -GCGGG---------------UGGCCGUGGCgg--UCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35844 0.71 0.155103
Target:  5'- cCGCCCGCgagcacaGGUccGCCGCCGcguccaccGCAgCCGCCg -3'
miRNA:   3'- -GCGGGUGg------CCG--UGGCGGU--------CGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37150 0.71 0.143706
Target:  5'- gCGCauaGCCGuCACCGCCGcGC-CCGCCg -3'
miRNA:   3'- -GCGgg-UGGCcGUGGCGGU-CGuGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.