miRNA display CGI


Results 81 - 100 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 43255 0.68 0.247838
Target:  5'- cCGCCCgcGCCgGGUgccugagaguugACCG-CAGCGcCCGCCg -3'
miRNA:   3'- -GCGGG--UGG-CCG------------UGGCgGUCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 39881 0.68 0.247838
Target:  5'- gCGCCCACaccgaaucguUGuCGCCGCC-GC-CCGCCu -3'
miRNA:   3'- -GCGGGUG----------GCcGUGGCGGuCGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 4658 0.68 0.247838
Target:  5'- gCGCCUACgGGCACggUGUCuGCACUGgCu -3'
miRNA:   3'- -GCGGGUGgCCGUG--GCGGuCGUGGCgG- -5'
23256 3' -64.7 NC_005259.1 + 31246 0.68 0.241981
Target:  5'- gGCgCGgCGGUGCCGCCc-CACaCGCCg -3'
miRNA:   3'- gCGgGUgGCCGUGGCGGucGUG-GCGG- -5'
23256 3' -64.7 NC_005259.1 + 27946 0.68 0.241981
Target:  5'- aGCUCGCCGGUgaacggauCUGUCAGCGUgGCCa -3'
miRNA:   3'- gCGGGUGGCCGu-------GGCGGUCGUGgCGG- -5'
23256 3' -64.7 NC_005259.1 + 8288 0.68 0.241981
Target:  5'- gGUgCGCgGGCAcCCGCaCGGaaaCGCCGCCu -3'
miRNA:   3'- gCGgGUGgCCGU-GGCG-GUC---GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 18848 0.68 0.241981
Target:  5'- gGUCuCGCCGGUGCCGUgcaaCGGUugCGCg -3'
miRNA:   3'- gCGG-GUGGCCGUGGCG----GUCGugGCGg -5'
23256 3' -64.7 NC_005259.1 + 16237 0.68 0.241981
Target:  5'- aCGCaCC-CCGGUGCUGC--GCACCGaCCg -3'
miRNA:   3'- -GCG-GGuGGCCGUGGCGguCGUGGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 37237 0.68 0.241981
Target:  5'- gGCCCguGCCGGauuggcuGCCGCCGuuGCcaggcuugagGCCGCCc -3'
miRNA:   3'- gCGGG--UGGCCg------UGGCGGU--CG----------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 4502 0.68 0.241981
Target:  5'- uCGCCaccgCGCCgggaguGGCGCUGCgCGGCACC-CCg -3'
miRNA:   3'- -GCGG----GUGG------CCGUGGCG-GUCGUGGcGG- -5'
23256 3' -64.7 NC_005259.1 + 51729 0.68 0.241402
Target:  5'- gGCCCACaugauGGcCACCGCCAcgcucucggcagcGUugCGCUc -3'
miRNA:   3'- gCGGGUGg----CC-GUGGCGGU-------------CGugGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37459 0.68 0.23624
Target:  5'- gGCCCgAUUGGC-UgGCCA-CGCCGCCg -3'
miRNA:   3'- gCGGG-UGGCCGuGgCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 768 0.68 0.23624
Target:  5'- gCGUCCACC-GCGCCGa-GGCgGCUGCCc -3'
miRNA:   3'- -GCGGGUGGcCGUGGCggUCG-UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 21523 0.68 0.23624
Target:  5'- aCGCCUGCUGuaGCgGCgAGgACUGCCg -3'
miRNA:   3'- -GCGGGUGGCcgUGgCGgUCgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45905 0.68 0.23624
Target:  5'- gGUCgGCgGGCACCGCUGGUAgaccgaggcuCUGCCc -3'
miRNA:   3'- gCGGgUGgCCGUGGCGGUCGU----------GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 61671 0.68 0.23624
Target:  5'- uGCCCAUCGGCggcaaaaugugaAUCGCgGGUcuuACCGUCc -3'
miRNA:   3'- gCGGGUGGCCG------------UGGCGgUCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 62925 0.68 0.23454
Target:  5'- uCGUCC-UCGGUuugcggcucgcgcuGCUGCCgGGCACCGCUg -3'
miRNA:   3'- -GCGGGuGGCCG--------------UGGCGG-UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35727 0.68 0.230614
Target:  5'- cCGCCCGacgacCCGGCGCUGCCcGGCcCCa-- -3'
miRNA:   3'- -GCGGGU-----GGCCGUGGCGG-UCGuGGcgg -5'
23256 3' -64.7 NC_005259.1 + 66631 0.68 0.230614
Target:  5'- uCGUCC-CUGGcCACCGCuCGGauuGCUGCCg -3'
miRNA:   3'- -GCGGGuGGCC-GUGGCG-GUCg--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 20773 0.69 0.225101
Target:  5'- cCGCCCACCgGGUGgCGCgucgaCAGCAagaGCCa -3'
miRNA:   3'- -GCGGGUGG-CCGUgGCG-----GUCGUgg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.