miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23257 5' -57.6 NC_005259.1 + 60043 0.66 0.679357
Target:  5'- aCGAUGucguuCGGGGUcuUCUCGGGCucaggcucGGGCGGc -3'
miRNA:   3'- -GCUGCc----GCUCCA--AGAGCCUG--------UCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 508 0.66 0.658278
Target:  5'- uCGACGGCau-GUUCgaugcgcagUCGGACuacGGGCAGa -3'
miRNA:   3'- -GCUGCCGcucCAAG---------AGCCUG---UCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 11776 0.66 0.657221
Target:  5'- uCGACGGCGAGGgagUCccacacaUCGGGC--GCGa -3'
miRNA:   3'- -GCUGCCGCUCCa--AG-------AGCCUGucCGUc -5'
23257 5' -57.6 NC_005259.1 + 36300 0.66 0.647699
Target:  5'- uGAgcGCGAGcg-CUUGGGCGGGCGGg -3'
miRNA:   3'- gCUgcCGCUCcaaGAGCCUGUCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 67237 0.67 0.637108
Target:  5'- aCGGCGGUguaGGGGUUgagCGGGgccuCGGGCAGc -3'
miRNA:   3'- -GCUGCCG---CUCCAAga-GCCU----GUCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 17182 0.67 0.615921
Target:  5'- aGGCGGCGcAGGaagCcgCGcGugAGGCGGg -3'
miRNA:   3'- gCUGCCGC-UCCaa-Ga-GC-CugUCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 49585 0.67 0.605343
Target:  5'- cCGGCgGGCGGGGUcagcacCUCGaccuCGGGCAGc -3'
miRNA:   3'- -GCUG-CCGCUCCAa-----GAGCcu--GUCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 51420 0.68 0.552928
Target:  5'- gGGcCGGuUGAGG-UCUUGGGCGGGCc- -3'
miRNA:   3'- gCU-GCC-GCUCCaAGAGCCUGUCCGuc -5'
23257 5' -57.6 NC_005259.1 + 26824 0.68 0.53232
Target:  5'- cCGGCGGUGGugccggggcGGUcugCUCGGGCAGGa-- -3'
miRNA:   3'- -GCUGCCGCU---------CCAa--GAGCCUGUCCguc -5'
23257 5' -57.6 NC_005259.1 + 64613 0.68 0.53232
Target:  5'- uGACGGCGAG-----CGcGACGGGCAGc -3'
miRNA:   3'- gCUGCCGCUCcaagaGC-CUGUCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 9102 0.68 0.52619
Target:  5'- cCGAgGGCGGGGaaCUCaaucccacgcgccccGGuACGGGCAGc -3'
miRNA:   3'- -GCUgCCGCUCCaaGAG---------------CC-UGUCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 57443 0.68 0.522119
Target:  5'- -cGCGGCGAGGUUggUGcGACGcugcGGCAGg -3'
miRNA:   3'- gcUGCCGCUCCAAgaGC-CUGU----CCGUC- -5'
23257 5' -57.6 NC_005259.1 + 35993 0.68 0.521103
Target:  5'- cCGACGGCGAGGc---CGGACugcaccgAGGUGGc -3'
miRNA:   3'- -GCUGCCGCUCCaagaGCCUG-------UCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 34878 0.69 0.511994
Target:  5'- uGcCGGacCGGGGUgcCUCGGGCAGGaCGGg -3'
miRNA:   3'- gCuGCC--GCUCCAa-GAGCCUGUCC-GUC- -5'
23257 5' -57.6 NC_005259.1 + 13313 0.69 0.482134
Target:  5'- -uGCGGCGGGGUauaUCUUGGuaaccCAcGGCGGg -3'
miRNA:   3'- gcUGCCGCUCCA---AGAGCCu----GU-CCGUC- -5'
23257 5' -57.6 NC_005259.1 + 2363 0.69 0.482134
Target:  5'- ---gGGCGGGGUUUUCuGuaucACAGGCAGg -3'
miRNA:   3'- gcugCCGCUCCAAGAGcC----UGUCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 32896 0.7 0.426041
Target:  5'- cCGGgGGCGAgGGUgagccacccggcccgCUCGGGCGcGGCGGu -3'
miRNA:   3'- -GCUgCCGCU-CCAa--------------GAGCCUGU-CCGUC- -5'
23257 5' -57.6 NC_005259.1 + 61033 0.74 0.242187
Target:  5'- uGGCGGCGAGG-UCgaccGACGGGCGGc -3'
miRNA:   3'- gCUGCCGCUCCaAGagc-CUGUCCGUC- -5'
23257 5' -57.6 NC_005259.1 + 34569 1.09 0.000873
Target:  5'- cCGACGGCGAGGUUCUCGGACAGGCAGa -3'
miRNA:   3'- -GCUGCCGCUCCAAGAGCCUGUCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.