Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23258 | 3' | -53.6 | NC_005259.1 | + | 63277 | 0.66 | 0.876509 |
Target: 5'- aCUUGGUCGGGUCGAUGccuucacgugcgagcAGcgGGGUCa- -3' miRNA: 3'- -GAGUCGGCCUAGCUAC---------------UCa-CCUAGcg -5' |
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23258 | 3' | -53.6 | NC_005259.1 | + | 41649 | 0.66 | 0.857459 |
Target: 5'- gUCuGCgGGcgcUCGGUGAGcgGGAUCuGCa -3' miRNA: 3'- gAGuCGgCCu--AGCUACUCa-CCUAG-CG- -5' |
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23258 | 3' | -53.6 | NC_005259.1 | + | 49043 | 0.66 | 0.854982 |
Target: 5'- gUCGGCaCGGA-CGAUGAcgugaucggcgguuGgcgcaagGGAUCGCu -3' miRNA: 3'- gAGUCG-GCCUaGCUACU--------------Ca------CCUAGCG- -5' |
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23258 | 3' | -53.6 | NC_005259.1 | + | 58558 | 0.67 | 0.822813 |
Target: 5'- -aCGGCuCGGG-CGGuUGGGccGGAUCGCg -3' miRNA: 3'- gaGUCG-GCCUaGCU-ACUCa-CCUAGCG- -5' |
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23258 | 3' | -53.6 | NC_005259.1 | + | 47337 | 0.67 | 0.804277 |
Target: 5'- gUCAGCCccguGAUCGuuuUGAGgauguugaGGAUCGUg -3' miRNA: 3'- gAGUCGGc---CUAGCu--ACUCa-------CCUAGCG- -5' |
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23258 | 3' | -53.6 | NC_005259.1 | + | 39572 | 0.67 | 0.794739 |
Target: 5'- -cCGGCCcGAccUCGAUGcuguugcuGUGGAUCGUg -3' miRNA: 3'- gaGUCGGcCU--AGCUACu-------CACCUAGCG- -5' |
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23258 | 3' | -53.6 | NC_005259.1 | + | 20267 | 0.68 | 0.785035 |
Target: 5'- ---cGCCGGGcCGAUGGaucGUGGA-CGCg -3' miRNA: 3'- gaguCGGCCUaGCUACU---CACCUaGCG- -5' |
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23258 | 3' | -53.6 | NC_005259.1 | + | 43139 | 0.7 | 0.658501 |
Target: 5'- cCUC-GCCGacgacAUCGAUGAGUGucucgcuGAUCGCa -3' miRNA: 3'- -GAGuCGGCc----UAGCUACUCAC-------CUAGCG- -5' |
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23258 | 3' | -53.6 | NC_005259.1 | + | 8816 | 0.71 | 0.583509 |
Target: 5'- uCUCGcGCCGGGcCGGUGAGUuGA-CGCg -3' miRNA: 3'- -GAGU-CGGCCUaGCUACUCAcCUaGCG- -5' |
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23258 | 3' | -53.6 | NC_005259.1 | + | 57016 | 0.71 | 0.572729 |
Target: 5'- cCUCAGCgCGGcUCGgcGcGGUgGGGUCGCa -3' miRNA: 3'- -GAGUCG-GCCuAGCuaC-UCA-CCUAGCG- -5' |
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23258 | 3' | -53.6 | NC_005259.1 | + | 34270 | 1.11 | 0.001551 |
Target: 5'- gCUCAGCCGGAUCGAUGAGUGGAUCGCc -3' miRNA: 3'- -GAGUCGGCCUAGCUACUCACCUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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