miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23258 5' -57.5 NC_005259.1 + 17051 0.68 0.579451
Target:  5'- cCGCGACCC-CGA--GGCGGUgCGCGc -3'
miRNA:   3'- aGUGCUGGGuGCUggUCGCCA-GUGCc -5'
23258 5' -57.5 NC_005259.1 + 27891 0.68 0.588818
Target:  5'- cCACGAUCCACcuggggucgccgaGACCGcGCGGgugguaGCGGu -3'
miRNA:   3'- aGUGCUGGGUG-------------CUGGU-CGCCag----UGCC- -5'
23258 5' -57.5 NC_005259.1 + 33299 0.68 0.599258
Target:  5'- cCACGGC-UGCGGCUcgaucccgccgucGGCGGUCACGcGg -3'
miRNA:   3'- aGUGCUGgGUGCUGG-------------UCGCCAGUGC-C- -5'
23258 5' -57.5 NC_005259.1 + 37487 0.68 0.600303
Target:  5'- -gGCuGACCCACccCCGGCGGUgagCACGa -3'
miRNA:   3'- agUG-CUGGGUGcuGGUCGCCA---GUGCc -5'
23258 5' -57.5 NC_005259.1 + 16810 0.68 0.61077
Target:  5'- aUCGCG-CUCGgGGCCGG-GGUCAUGa -3'
miRNA:   3'- -AGUGCuGGGUgCUGGUCgCCAGUGCc -5'
23258 5' -57.5 NC_005259.1 + 57304 0.68 0.61077
Target:  5'- gCACGACaucgaGC-ACCGGCGGUguCGGu -3'
miRNA:   3'- aGUGCUGgg---UGcUGGUCGCCAguGCC- -5'
23258 5' -57.5 NC_005259.1 + 44943 0.67 0.621253
Target:  5'- cCAUGGCaCCAgCGGgCAguGCGGUCAuCGGg -3'
miRNA:   3'- aGUGCUG-GGU-GCUgGU--CGCCAGU-GCC- -5'
23258 5' -57.5 NC_005259.1 + 12222 0.67 0.631746
Target:  5'- gCACcGCCCGCuGGCCGGgcaaUGGUCACa- -3'
miRNA:   3'- aGUGcUGGGUG-CUGGUC----GCCAGUGcc -5'
23258 5' -57.5 NC_005259.1 + 65627 0.67 0.631746
Target:  5'- gCAUGGCCCAUGAUCGGCuG-CACc- -3'
miRNA:   3'- aGUGCUGGGUGCUGGUCGcCaGUGcc -5'
23258 5' -57.5 NC_005259.1 + 64075 0.67 0.652723
Target:  5'- -gGCGAUCCAcaccucacCGACCA-CGGUCAUGc -3'
miRNA:   3'- agUGCUGGGU--------GCUGGUcGCCAGUGCc -5'
23258 5' -57.5 NC_005259.1 + 46646 0.67 0.663189
Target:  5'- cCAUGGCCaCACGGCU-GCGGUUGaGGu -3'
miRNA:   3'- aGUGCUGG-GUGCUGGuCGCCAGUgCC- -5'
23258 5' -57.5 NC_005259.1 + 50383 0.67 0.663189
Target:  5'- aCuCGGCCCACGugUcGCGGcUCGCc- -3'
miRNA:   3'- aGuGCUGGGUGCugGuCGCC-AGUGcc -5'
23258 5' -57.5 NC_005259.1 + 2138 0.67 0.663189
Target:  5'- aCGCaGACCCGCacggugcuGGCCAGCGG-CGuCGa -3'
miRNA:   3'- aGUG-CUGGGUG--------CUGGUCGCCaGU-GCc -5'
23258 5' -57.5 NC_005259.1 + 49573 0.66 0.67363
Target:  5'- gUCGUGGCCa--GACCGGCGG--GCGGg -3'
miRNA:   3'- -AGUGCUGGgugCUGGUCGCCagUGCC- -5'
23258 5' -57.5 NC_005259.1 + 33671 0.66 0.682997
Target:  5'- gCcCGGCCCacccuguGCGACCaAGCG-UCAUGGa -3'
miRNA:   3'- aGuGCUGGG-------UGCUGG-UCGCcAGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 60581 0.66 0.684035
Target:  5'- -gGCGGCCCACGGCgAGuCGGgugC-CGu -3'
miRNA:   3'- agUGCUGGGUGCUGgUC-GCCa--GuGCc -5'
23258 5' -57.5 NC_005259.1 + 46586 0.66 0.684035
Target:  5'- cCGCGccGCCCgagGCGAgCAGCGcGUCguugGCGGu -3'
miRNA:   3'- aGUGC--UGGG---UGCUgGUCGC-CAG----UGCC- -5'
23258 5' -57.5 NC_005259.1 + 55236 0.66 0.684035
Target:  5'- uUCGauGCCCACGACCuauGuCGGgguccacccCACGGg -3'
miRNA:   3'- -AGUgcUGGGUGCUGGu--C-GCCa--------GUGCC- -5'
23258 5' -57.5 NC_005259.1 + 51086 0.66 0.7047
Target:  5'- gCAUGGCCCACGAUaacgagGGCGGgaUCugucCGGc -3'
miRNA:   3'- aGUGCUGGGUGCUGg-----UCGCC--AGu---GCC- -5'
23258 5' -57.5 NC_005259.1 + 57813 0.66 0.714941
Target:  5'- aCGCcGCCCGCacgcauGGCCAGauCGG-CACGGa -3'
miRNA:   3'- aGUGcUGGGUG------CUGGUC--GCCaGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.