miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23259 3' -55.7 NC_005259.1 + 52205 0.66 0.7254
Target:  5'- aCGGCUcaUG-GGCaccgCGUUCCGCGcCCGCu -3'
miRNA:   3'- -GUCGA--ACuCCGa---GUAGGGUGCuGGUG- -5'
23259 3' -55.7 NC_005259.1 + 14654 0.66 0.704141
Target:  5'- uGGCgUG-GGCUCAgCCCGacucgGGCCGCg -3'
miRNA:   3'- gUCGaACuCCGAGUaGGGUg----CUGGUG- -5'
23259 3' -55.7 NC_005259.1 + 36135 0.66 0.693402
Target:  5'- gGGCcgccGGGCUgucCGUCgCCAUGGCCACg -3'
miRNA:   3'- gUCGaac-UCCGA---GUAG-GGUGCUGGUG- -5'
23259 3' -55.7 NC_005259.1 + 20795 0.67 0.64997
Target:  5'- aCAGCaaGAGccaccuGCUCGUCCCgucGCGGCgCACc -3'
miRNA:   3'- -GUCGaaCUC------CGAGUAGGG---UGCUG-GUG- -5'
23259 3' -55.7 NC_005259.1 + 46449 0.68 0.595383
Target:  5'- aAGCUgcugcucggUGAGGCUCAgaUCCUugaGCGcugugGCCACg -3'
miRNA:   3'- gUCGA---------ACUCCGAGU--AGGG---UGC-----UGGUG- -5'
23259 3' -55.7 NC_005259.1 + 35356 0.68 0.584522
Target:  5'- gCAGCUUGuucaccaaguAGGCgguagGUCCgACGGCCAUg -3'
miRNA:   3'- -GUCGAAC----------UCCGag---UAGGgUGCUGGUG- -5'
23259 3' -55.7 NC_005259.1 + 44339 0.69 0.520448
Target:  5'- gUAGCUgccGGGCUUGUUCCACGGCUc- -3'
miRNA:   3'- -GUCGAac-UCCGAGUAGGGUGCUGGug -5'
23259 3' -55.7 NC_005259.1 + 33953 1.09 0.001096
Target:  5'- aCAGCUUGAGGCUCAUCCCACGACCACc -3'
miRNA:   3'- -GUCGAACUCCGAGUAGGGUGCUGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.