miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23259 5' -57 NC_005259.1 + 66657 0.66 0.648716
Target:  5'- -uGCC-GGUcgGCGGU--GCUGCGAUg -3'
miRNA:   3'- cuCGGcCCAuaCGCCAcuCGACGUUG- -5'
23259 5' -57 NC_005259.1 + 27097 0.66 0.648716
Target:  5'- cGGCUGcc-AUGCGGUGGGCUGUg-- -3'
miRNA:   3'- cUCGGCccaUACGCCACUCGACGuug -5'
23259 5' -57 NC_005259.1 + 8443 0.66 0.647628
Target:  5'- -uGCCGGuGgucucgGUGUGGUcgagguaGAGCUGCAcgaGCa -3'
miRNA:   3'- cuCGGCC-Ca-----UACGCCA-------CUCGACGU---UG- -5'
23259 5' -57 NC_005259.1 + 20976 0.66 0.616051
Target:  5'- -cGCCGGGgugacaacUGCGuGUGGGCcuacucggGCGGCg -3'
miRNA:   3'- cuCGGCCCau------ACGC-CACUCGa-------CGUUG- -5'
23259 5' -57 NC_005259.1 + 9535 0.66 0.616051
Target:  5'- -cGCCGGGUcacCGGaGAGCUGCccGGCc -3'
miRNA:   3'- cuCGGCCCAuacGCCaCUCGACG--UUG- -5'
23259 5' -57 NC_005259.1 + 64388 0.67 0.605178
Target:  5'- -uGCUuuuguGGGUcgGUGaUGAGCUGCGAUg -3'
miRNA:   3'- cuCGG-----CCCAuaCGCcACUCGACGUUG- -5'
23259 5' -57 NC_005259.1 + 8404 0.67 0.605178
Target:  5'- cGAGCCGGGccaccucGCuGGcGAGCaUGCGAUg -3'
miRNA:   3'- -CUCGGCCCaua----CG-CCaCUCG-ACGUUG- -5'
23259 5' -57 NC_005259.1 + 47988 0.67 0.60192
Target:  5'- -uGCCGGGca-GCGcaagaccggcuuguGUGAGCUGCuGCa -3'
miRNA:   3'- cuCGGCCCauaCGC--------------CACUCGACGuUG- -5'
23259 5' -57 NC_005259.1 + 39743 0.67 0.594328
Target:  5'- uGGGCCGGaUGUGCGac-AGCgGCAGCa -3'
miRNA:   3'- -CUCGGCCcAUACGCcacUCGaCGUUG- -5'
23259 5' -57 NC_005259.1 + 1549 0.67 0.551321
Target:  5'- gGGGCCGcGUucgggGCGGUGAcGCUGUgAGCg -3'
miRNA:   3'- -CUCGGCcCAua---CGCCACU-CGACG-UUG- -5'
23259 5' -57 NC_005259.1 + 65269 0.68 0.530163
Target:  5'- aGGGCgaGGGUGUGUGG-GuGCUGCc-- -3'
miRNA:   3'- -CUCGg-CCCAUACGCCaCuCGACGuug -5'
23259 5' -57 NC_005259.1 + 47040 0.68 0.519695
Target:  5'- aGGCCGGGgaucUGCgcgagcguguuGGUGAGCgagGCGAg -3'
miRNA:   3'- cUCGGCCCau--ACG-----------CCACUCGa--CGUUg -5'
23259 5' -57 NC_005259.1 + 41013 0.68 0.519695
Target:  5'- cGGGCCGGuccacaGUGUGGUGccGCUGuCAACg -3'
miRNA:   3'- -CUCGGCCca----UACGCCACu-CGAC-GUUG- -5'
23259 5' -57 NC_005259.1 + 33593 0.69 0.4687
Target:  5'- cGGGCCaccgaGGc--GCGGUcGAGCUGCAACc -3'
miRNA:   3'- -CUCGGc----CCauaCGCCA-CUCGACGUUG- -5'
23259 5' -57 NC_005259.1 + 29093 0.72 0.325515
Target:  5'- aGGCCGGGUggugagcugAUGCGGacccugcuggUGAGC-GCGGCg -3'
miRNA:   3'- cUCGGCCCA---------UACGCC----------ACUCGaCGUUG- -5'
23259 5' -57 NC_005259.1 + 50497 0.74 0.247492
Target:  5'- uGAGCCGGucgauGUggGCGGUGcGCUGCAc- -3'
miRNA:   3'- -CUCGGCC-----CAuaCGCCACuCGACGUug -5'
23259 5' -57 NC_005259.1 + 33987 1.08 0.000858
Target:  5'- uGAGCCGGGUAUGCGGUGAGCUGCAACc -3'
miRNA:   3'- -CUCGGCCCAUACGCCACUCGACGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.