miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23260 3' -52.6 NC_005259.1 + 11227 0.66 0.896587
Target:  5'- cGCCGcagUCCUcGG---GCUCGGGCAUCg -3'
miRNA:   3'- -CGGC---AGGAaCCagcUGAGUUCGUAGa -5'
23260 3' -52.6 NC_005259.1 + 39940 0.66 0.896587
Target:  5'- gGUCGUCCUUGGU-GACgaacuuggUCAGGCu--- -3'
miRNA:   3'- -CGGCAGGAACCAgCUG--------AGUUCGuaga -5'
23260 3' -52.6 NC_005259.1 + 25445 0.67 0.866346
Target:  5'- aGCCGUaugaGGUCGGC--GAGCGUCUu -3'
miRNA:   3'- -CGGCAggaaCCAGCUGagUUCGUAGA- -5'
23260 3' -52.6 NC_005259.1 + 22055 0.67 0.841076
Target:  5'- cCCGUCCUcaUGGUCG-CUCAccguggugAGC-UCa -3'
miRNA:   3'- cGGCAGGA--ACCAGCuGAGU--------UCGuAGa -5'
23260 3' -52.6 NC_005259.1 + 56491 0.67 0.840198
Target:  5'- aCCGUCCUcgacggUGG-CGAugauuccCUCAGGCAUUg -3'
miRNA:   3'- cGGCAGGA------ACCaGCU-------GAGUUCGUAGa -5'
23260 3' -52.6 NC_005259.1 + 49443 0.69 0.778869
Target:  5'- cGCCG-CCUUGGUCGGCagccggaugcccagCAGGUcgCc -3'
miRNA:   3'- -CGGCaGGAACCAGCUGa-------------GUUCGuaGa -5'
23260 3' -52.6 NC_005259.1 + 28331 0.69 0.754435
Target:  5'- uGCCGUCCUUGG-CGGCgaaaUCGAGg---- -3'
miRNA:   3'- -CGGCAGGAACCaGCUG----AGUUCguaga -5'
23260 3' -52.6 NC_005259.1 + 42051 0.69 0.754435
Target:  5'- cGCUGUCCUcggGGUgGGCggcUAGGUAUCg -3'
miRNA:   3'- -CGGCAGGAa--CCAgCUGa--GUUCGUAGa -5'
23260 3' -52.6 NC_005259.1 + 62981 0.69 0.733516
Target:  5'- cUCGUCCUcgcGcGUCGACUCGauGGCAUUg -3'
miRNA:   3'- cGGCAGGAa--C-CAGCUGAGU--UCGUAGa -5'
23260 3' -52.6 NC_005259.1 + 50414 0.7 0.701398
Target:  5'- cGCCGgugCCUUGacCGGCUCGGGCAg-- -3'
miRNA:   3'- -CGGCa--GGAACcaGCUGAGUUCGUaga -5'
23260 3' -52.6 NC_005259.1 + 54944 0.73 0.537332
Target:  5'- cCCGUCUUUGGUCGAC----GCGUCa -3'
miRNA:   3'- cGGCAGGAACCAGCUGaguuCGUAGa -5'
23260 3' -52.6 NC_005259.1 + 33849 1.11 0.0018
Target:  5'- cGCCGUCCUUGGUCGACUCAAGCAUCUg -3'
miRNA:   3'- -CGGCAGGAACCAGCUGAGUUCGUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.