Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 39940 | 0.66 | 0.896587 |
Target: 5'- gGUCGUCCUUGGU-GACgaacuuggUCAGGCu--- -3' miRNA: 3'- -CGGCAGGAACCAgCUG--------AGUUCGuaga -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 11227 | 0.66 | 0.896587 |
Target: 5'- cGCCGcagUCCUcGG---GCUCGGGCAUCg -3' miRNA: 3'- -CGGC---AGGAaCCagcUGAGUUCGUAGa -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 25445 | 0.67 | 0.866346 |
Target: 5'- aGCCGUaugaGGUCGGC--GAGCGUCUu -3' miRNA: 3'- -CGGCAggaaCCAGCUGagUUCGUAGA- -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 22055 | 0.67 | 0.841076 |
Target: 5'- cCCGUCCUcaUGGUCG-CUCAccguggugAGC-UCa -3' miRNA: 3'- cGGCAGGA--ACCAGCuGAGU--------UCGuAGa -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 56491 | 0.67 | 0.840198 |
Target: 5'- aCCGUCCUcgacggUGG-CGAugauuccCUCAGGCAUUg -3' miRNA: 3'- cGGCAGGA------ACCaGCU-------GAGUUCGUAGa -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 49443 | 0.69 | 0.778869 |
Target: 5'- cGCCG-CCUUGGUCGGCagccggaugcccagCAGGUcgCc -3' miRNA: 3'- -CGGCaGGAACCAGCUGa-------------GUUCGuaGa -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 42051 | 0.69 | 0.754435 |
Target: 5'- cGCUGUCCUcggGGUgGGCggcUAGGUAUCg -3' miRNA: 3'- -CGGCAGGAa--CCAgCUGa--GUUCGUAGa -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 28331 | 0.69 | 0.754435 |
Target: 5'- uGCCGUCCUUGG-CGGCgaaaUCGAGg---- -3' miRNA: 3'- -CGGCAGGAACCaGCUG----AGUUCguaga -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 62981 | 0.69 | 0.733516 |
Target: 5'- cUCGUCCUcgcGcGUCGACUCGauGGCAUUg -3' miRNA: 3'- cGGCAGGAa--C-CAGCUGAGU--UCGUAGa -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 50414 | 0.7 | 0.701398 |
Target: 5'- cGCCGgugCCUUGacCGGCUCGGGCAg-- -3' miRNA: 3'- -CGGCa--GGAACcaGCUGAGUUCGUaga -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 54944 | 0.73 | 0.537332 |
Target: 5'- cCCGUCUUUGGUCGAC----GCGUCa -3' miRNA: 3'- cGGCAGGAACCAGCUGaguuCGUAGa -5' |
|||||||
23260 | 3' | -52.6 | NC_005259.1 | + | 33849 | 1.11 | 0.0018 |
Target: 5'- cGCCGUCCUUGGUCGACUCAAGCAUCUg -3' miRNA: 3'- -CGGCAGGAACCAGCUGAGUUCGUAGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home