miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23260 5' -59.9 NC_005259.1 + 33884 1.11 0.000351
Target:  5'- aGCACACGCGGGAACCACCCGCGCGACg -3'
miRNA:   3'- -CGUGUGCGCCCUUGGUGGGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 33122 0.77 0.106236
Target:  5'- gGC-CACGCGGcAGCCGCCgCGCGUGAUc -3'
miRNA:   3'- -CGuGUGCGCCcUUGGUGG-GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 4426 0.76 0.128049
Target:  5'- cCGCGCGCccgaGGucGAGCCGCCCGUGCGAg -3'
miRNA:   3'- cGUGUGCG----CC--CUUGGUGGGCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 25942 0.75 0.149972
Target:  5'- aGCGCACGCcGGuGCCcgGCCCGC-CGACg -3'
miRNA:   3'- -CGUGUGCGcCCuUGG--UGGGCGcGCUG- -5'
23260 5' -59.9 NC_005259.1 + 36506 0.75 0.153942
Target:  5'- aGCuCugGCGuguccuuGAACCACCCGCGCGGu -3'
miRNA:   3'- -CGuGugCGCc------CUUGGUGGGCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 66229 0.74 0.184493
Target:  5'- cGCACACGCGGucgugcAGCCAUCgacgcaGCGCGGCc -3'
miRNA:   3'- -CGUGUGCGCCc-----UUGGUGGg-----CGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 36864 0.74 0.189272
Target:  5'- uGCGCcguUGCuGGcACCGCCCGCGcCGACg -3'
miRNA:   3'- -CGUGu--GCGcCCuUGGUGGGCGC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 3125 0.73 0.209486
Target:  5'- gGCAC-CGUGGGcAgcggacggcACCGCCCGUGgGACu -3'
miRNA:   3'- -CGUGuGCGCCC-U---------UGGUGGGCGCgCUG- -5'
23260 5' -59.9 NC_005259.1 + 2949 0.73 0.214823
Target:  5'- -gGCGCGCGaGAcccugGCCACCgCGCGCGAa -3'
miRNA:   3'- cgUGUGCGCcCU-----UGGUGG-GCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 32876 0.72 0.254885
Target:  5'- cGCGCGCGgugaucgauucacCGGGGgcgagggugaGCCACCCggcccgcucggGCGCGGCg -3'
miRNA:   3'- -CGUGUGC-------------GCCCU----------UGGUGGG-----------CGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 63011 0.71 0.274795
Target:  5'- gGCAgGCuGUGGGAACUcgauGCCCGCGagcuGACu -3'
miRNA:   3'- -CGUgUG-CGCCCUUGG----UGGGCGCg---CUG- -5'
23260 5' -59.9 NC_005259.1 + 6630 0.71 0.281478
Target:  5'- uGC-CA-GCGGGu-CCGCCCGUGaCGACa -3'
miRNA:   3'- -CGuGUgCGCCCuuGGUGGGCGC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 41656 0.7 0.324288
Target:  5'- gGCGCucggugaGCGGGAucugcACCGCgUGCGUGGCc -3'
miRNA:   3'- -CGUGug-----CGCCCU-----UGGUGgGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 18873 0.7 0.324288
Target:  5'- uGCGCGCGUGGGAgGCCaACCaCGaUGuCGACc -3'
miRNA:   3'- -CGUGUGCGCCCU-UGG-UGG-GC-GC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 9860 0.7 0.33035
Target:  5'- cCAgACGCGGGAACgcgacgauguuguCGCUuuccucgCGCGCGACg -3'
miRNA:   3'- cGUgUGCGCCCUUG-------------GUGG-------GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 4508 0.7 0.339597
Target:  5'- cCGCGC-CGGGAGugGCgCUGCGCGGCa -3'
miRNA:   3'- cGUGUGcGCCCUUggUG-GGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 5652 0.7 0.339597
Target:  5'- aGgACG-GCGGGcGCUACaCGCGCGACa -3'
miRNA:   3'- -CgUGUgCGCCCuUGGUGgGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 14205 0.69 0.355423
Target:  5'- aGCAgGC-CGGGAucaACUACCCGgCGCG-Cg -3'
miRNA:   3'- -CGUgUGcGCCCU---UGGUGGGC-GCGCuG- -5'
23260 5' -59.9 NC_005259.1 + 6486 0.69 0.361897
Target:  5'- cGCuCACGCGGGuacugcuGGCCcacaucgaccgacGCCgugCGCGCGACa -3'
miRNA:   3'- -CGuGUGCGCCC-------UUGG-------------UGG---GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 34684 0.69 0.363528
Target:  5'- cGCAUugGCGcugcGGAugaugccgaccAUCugCCGCGCGAg -3'
miRNA:   3'- -CGUGugCGC----CCU-----------UGGugGGCGCGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.