miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23260 5' -59.9 NC_005259.1 + 36541 0.67 0.50924
Target:  5'- -gACACGCGGGGugAUCugCgGUGUGGg -3'
miRNA:   3'- cgUGUGCGCCCU--UGGugGgCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 22333 0.67 0.50924
Target:  5'- cGCACuguuCGCaGGAuuuACCGCCacgaugCGuCGCGACg -3'
miRNA:   3'- -CGUGu---GCGcCCU---UGGUGG------GC-GCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 6673 0.67 0.508248
Target:  5'- ---gACGCGcGAGCUGCCCgcuuccaagagugGCGCGACa -3'
miRNA:   3'- cgugUGCGCcCUUGGUGGG-------------CGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 18459 0.67 0.489562
Target:  5'- cGCACAcCGcCGGuccuGAGCCguGCCCGaCGcCGACg -3'
miRNA:   3'- -CGUGU-GC-GCC----CUUGG--UGGGC-GC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 15547 0.67 0.486641
Target:  5'- uCACugGCcGGugccacccucagguGGCCACCCucggggccaGCGCGACg -3'
miRNA:   3'- cGUGugCGcCC--------------UUGGUGGG---------CGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 48792 0.67 0.479857
Target:  5'- --uCAgGCGGGAACguCCCGC-CGAg -3'
miRNA:   3'- cguGUgCGCCCUUGguGGGCGcGCUg -5'
23260 5' -59.9 NC_005259.1 + 65130 0.67 0.470247
Target:  5'- gGCGCAC-CGGcGGCCACCC-C-CGACa -3'
miRNA:   3'- -CGUGUGcGCCcUUGGUGGGcGcGCUG- -5'
23260 5' -59.9 NC_005259.1 + 37372 0.67 0.460736
Target:  5'- aGCuCACGCccucGGcACCGCCCGcCGCGcCg -3'
miRNA:   3'- -CGuGUGCGc---CCuUGGUGGGC-GCGCuG- -5'
23260 5' -59.9 NC_005259.1 + 36036 0.68 0.451327
Target:  5'- aCAUGaucaGCGa-GGCCACCCGCGCGAg -3'
miRNA:   3'- cGUGUg---CGCccUUGGUGGGCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 45869 0.68 0.451327
Target:  5'- gGCAUGC-CGGGGaacagGCCACCCGCuGUGu- -3'
miRNA:   3'- -CGUGUGcGCCCU-----UGGUGGGCG-CGCug -5'
23260 5' -59.9 NC_005259.1 + 67973 0.68 0.442025
Target:  5'- cGCGCGCaGCGGcGuGGCCACCgccgcgaGCGuCGACu -3'
miRNA:   3'- -CGUGUG-CGCC-C-UUGGUGGg------CGC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 62845 0.68 0.432832
Target:  5'- -aGCGCGCGGuuGAcgagcaGCCGCUCGgCGCGAg -3'
miRNA:   3'- cgUGUGCGCC--CU------UGGUGGGC-GCGCUg -5'
23260 5' -59.9 NC_005259.1 + 50119 0.68 0.405938
Target:  5'- cGUACGCaCGGGcACCGCCaCaCGCGAUu -3'
miRNA:   3'- -CGUGUGcGCCCuUGGUGG-GcGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 20336 0.69 0.400687
Target:  5'- uGCACGaccuaugGCGGGcgguacuacgcguCCACCuCGUGCGACg -3'
miRNA:   3'- -CGUGUg------CGCCCuu-----------GGUGG-GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 20963 0.69 0.38012
Target:  5'- cUACACGCGGu-AUCGCCgGgGUGACa -3'
miRNA:   3'- cGUGUGCGCCcuUGGUGGgCgCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 6204 0.69 0.371761
Target:  5'- aGCGugaGCGgGGuGAGCCGCCgCGC-CGACa -3'
miRNA:   3'- -CGUg--UGCgCC-CUUGGUGG-GCGcGCUG- -5'
23260 5' -59.9 NC_005259.1 + 34684 0.69 0.363528
Target:  5'- cGCAUugGCGcugcGGAugaugccgaccAUCugCCGCGCGAg -3'
miRNA:   3'- -CGUGugCGC----CCU-----------UGGugGGCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 53037 0.69 0.363528
Target:  5'- gGCAUcgugaccuCGCGGGAAaUugCUGCGUGACg -3'
miRNA:   3'- -CGUGu-------GCGCCCUUgGugGGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 6486 0.69 0.361897
Target:  5'- cGCuCACGCGGGuacugcuGGCCcacaucgaccgacGCCgugCGCGCGACa -3'
miRNA:   3'- -CGuGUGCGCCC-------UUGG-------------UGG---GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 14205 0.69 0.355423
Target:  5'- aGCAgGC-CGGGAucaACUACCCGgCGCG-Cg -3'
miRNA:   3'- -CGUgUGcGCCCU---UGGUGGGC-GCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.